Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00471 ATGGTTTTGTCTTGGACTAGAAGAAACGTTTTCCGCCGTGGAAGGAAGGAGAAGGCACAGCTTCAAGGTGGTGAATTGGAGGTGGAGGTTGTGATTCCGAACCACTTCCGGTGCCCGGTGAGTTTGGAGTTGATGACAGACCCGGTGACTTTATCAACCGGCATCACCTACGACAGGTTGAGCATTGAGAAGTGGATTGAAGGAGGGAACAGAACATGTCCCGTCACCAACCAGGTTCTCACAACCTTTGACATCATCCCCAACCACGTCATTCGTAGGATGATCCAAGATTGGTGCGTTCAAAACACTTCTTTTGGGATTCAGAGGATACCCACTCCTCGGATTCCTGTCTCTAGTGACGAGGTTTCCCAGACATGTTCCAAGATCATGTCTGCTTCCCAACACAGGGATCACAAGAAGTGTCAGGAGTTGGTTGGGAAGATTAAGGTTTGGGGGAGAGAGAGTGAGAGGAACAAGAGGTGCATAGTAGGGAATGGTGTTTGTAATGTTCTTGCCTATGCCTTTGATTGTTTCTCAAGTGATGATTCTATGGACAAGCATGTGGTTGTTTTGGAGGAGATTTTGGAGGTGTTGACGTGGATGATCCCACTTGGTGATTCTCAAGTGATGAGTTCACAAGCTTCTTTGAATTCATTGGTTTGGTTTCTAGAGGGGAAAGACCTTGCATCAAGGCAAAATGCTGCTTTGTTGCTCAAGGAAGTGTATGTCCAAGAATTGGCCAAGGTTTCAGGAGTTGCTGAGGCTTTGGTTAAGATGGTTAGGGAGCCTATTGGGAGTACTGCCACCAAGGCTTGTTTGGTAACAATTTTCAACTTGGTTTCATCAGAGGACAATAGAGAGGGAATTGCTGAGAGATTTGTGGAGTTGGGTTTGGTTTCACTTTTGCTTGAGGCTATTGTTGATGGAGAGAAAGGTGTGTGTGAAAAGGCACTCGGGGTGTTGGATTGCATTTGTGATTGCCAGCAAGGGAAGGAGGTCGTTAAAAGCAATGCTCTCACCTTGCCTCTTGTTATTAAGAAGATTTTGAGGGTGTCACTGTTGGCTTCAGGTTTTGCTGTGTCTATTCTTAGGAAGATTTGTGACAAGAGGGAGGAAGGGGTTCTGATTGAGGCACTTCAGGTTGGGGCTTTTCAGAAGCTCTTGGTTATGCTTCAGGTTGGGTGTGACGAGAGCACAAAGGAGAATGCCACCGAGTTGTTGAAACTGCTCAATGGTTACAGGAACAAAGCAGAGTGCACTGACTCATCATCATTGGATTTCAAGCATCTTAAGAAGCCCTTCTGA 1305 0.4621 MVLSWTRRNVFRRGRKEKAQLQGGELEVEVVIPNHFRCPVSLELMTDPVTLSTGITYDRLSIEKWIEGGNRTCPVTNQVLTTFDIIPNHVIRRMIQDWCVQNTSFGIQRIPTPRIPVSSDEVSQTCSKIMSASQHRDHKKCQELVGKIKVWGRESERNKRCIVGNGVCNVLAYAFDCFSSDDSMDKHVVVLEEILEVLTWMIPLGDSQVMSSQASLNSLVWFLEGKDLASRQNAALLLKEVYVQELAKVSGVAEALVKMVREPIGSTATKACLVTIFNLVSSEDNREGIAERFVELGLVSLLLEAIVDGEKGVCEKALGVLDCICDCQQGKEVVKSNALTLPLVIKKILRVSLLASGFAVSILRKICDKREEGVLIEALQVGAFQKLLVMLQVGCDESTKENATELLKLLNGYRNKAECTDSSSLDFKHLKKPF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00471 434 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Cca01g00471 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 108 IPR013083 -
Cca01g00471 434 Gene3D - 119 419 IPR011989 -
Cca01g00471 434 PANTHER WDSAM1 PROTEIN 10 434 IPR045185 GO:0061630
Cca01g00471 434 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Cca01g00471 434 SUPERFAMILY RING/U-box 26 105 - -
Cca01g00471 434 SUPERFAMILY ARM repeat 215 410 IPR016024 -
Cca01g00471 434 Pfam U-box domain 32 102 IPR003613 GO:0004842|GO:0016567
Cca01g00471 434 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 10 434 - -
Cca01g00471 434 CDD RING-Ubox_PUB 36 78 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00471 Cca-Chr1 5871363 5873104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00471 24 434 U-box Gene Family AT5G37490 47.619 7.04e-125 367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00471 01 5871363 5873104 Cca01g00471 01 5871363 5873104 ECH