Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00470 ATGAAGTCCCACATCGCTTTTCTCCTCTCATGTTTCCTAATCCTCTACGCGCACGCCCAGGACGCCCCCGCAATGCTCGCTCTTAAAACCACCCTCAACCCGCCCCAATCCCTCGGCTGGTCCGACCCGGACCCGTGCCGGTGGAAACACGTCGTGTGCTCCGAGCAAAAGCGGGTCACCCGGATCCAAATCGGTCACCAGGGCCTCCAAGGAACACTCCCCAACAGCACCGTGATCCAAACTTTGACCCAATTGGAACGGTTGGAGCTCCAATTCAACAACATTTCGGGTCCTCTCCCGAGCCTAAACGGGTTGAGTTCGCTCCAAGTCCTCATTCTCAGCAACAACCGATTCACTTCCATTCCCGACGACTTCTTCGCCGGCTTGCCGGAGCTCCAGAGCGTCGAGATCGACAACAACCCCTTCAAGCCTTGGAAATTTCCCGACACCATTGTCAACTCTTCCTCGCTACAAAACTTCTCCGCGAATTCCGCCAACGTTGTCGGAGCACTCCCGGAGATTTTCTCGAGTCTTCCCACGTTGACCCATTTGCACTTGGCCTTCAACAATCTCGAGGGTGTGTTGCCTCTGAGCCTTTCAAGCTCTCAGGTTGAGACTTTGTGGCTGAACGGGCAGAAGGGTAACAACCTTGGTGGCAATGTTGGTGTTTTGCAGAACATGACATCGTTGACGCAGGTTTGGTTGCATTCCAACGCGTTCACTGGGCCTCTTCCTGATTTTTCTGGGTTGCAAAGTTTGCAGGATTTGAACTTGAGGGATAATTCTTTCACGGGTCCTGTTCCTGGCTCTTTGTTGGGATTGAAATCGCTTAAAGTTGTGAATTTGACTAATAACTTGTTTCAGGGGGCAGTGCCTGAGtttggttctggggttgaggtggatttggatttggGTGATGATTCGAATAGCTTTTGTTTGCCACGTGTCGGGGAGTGTGATCCCAGGGTGGAGGTTTTGCTTTCTGTTGTGAGGGTTTTGGGGTATCCTAGAAGGTTTGCTGAGGATTGGAAGGGGAATGATCCTTGTGCTGATTGGATTGGGGTTACTTGTAACGGTGGTGGGGATATTACTGTTGTTAATTTTCAGAAGATGGGTCTTGAGGGTTCTATAGCTCCGGAGTTTGCTTTGCTTAAGTCATTGCAAAGGCTTGTGCTTGCTGATAATAATCTCACAGGGTCTATTCCTGAAGAGCTAGCTTCTTTGCCCGGGCTTGTTGAATTGAATGTTACAAACAATAGGCTTTATGGGAAGATTCCTAGTTTTAAGAGCAATGTGGTTGTTACCACTAATGGGAATAAGGATATTGGGAAAGATAAGCCCAGTCCAGGACCAACATCATCACATTTAGGTCCACTAAACTTGACAACTCCAAACACAATGGAAGAAAATGGTGGGAGAAGATCTTCACATGTCGGGGTGATTGTGTTTGCTGTGATTGGTGGTGTGGTGTTGGTTTTTGTGATTAGTTTCTTGGCTTTTTGTTTGTTTAGGATGAAGCAGAAACGGCTGAGCAAGGTGCAAAGTCCTAATGCATTGGTTATTCACCCGCGGCATTCTGGATCGGATAATGAGAGTGTGAAGATAGCGGTTGCGGGTTCAAGTCTCAGTGTTGCTGATATTAGTGGAATTGGAATGCAAAGTAGGAGTGAGGCAGGGGATATCCAGATGGGTGAAGCTGGAAACATGGTTATTTCTATACAGGTTCTGAGGAATGTCactgacaacttcagtgagaagaatatactgggacaaggaggtttcggaactgtttacaaaggtgaactgcatgatggcacaaagattgcagtgaaaaggatggagtgtggggcaataagtggaaaaggtacaacagaattcaagtctgaaattgctgttttgaccaaggttcgccaccggcatcttgtttctcttcttggttactgcttggatgggaatgagaagcttcttgtgtacgaatacatgcctcaggggacattaagtaagcacctttttaactggatggaagaaggactgaagccactggagtggaatagaagattgaccattgccttggatgtggcaagggctgttgagtatcttcatagcttggcccatcaaagctttattcatagggacttgaagccttcaaacattctccttggagatgatatgagggcaaaggtttcagatttcggccttGTGCGACTTGCTCCTGAAGGCAAAGCTTCTATAGAAACAAGGATTGCAGGAACTTTTGGATATTTGGCACCAGAATATGCAGTTACAGGTCGTGTGACAACTAAAGTTGATGTGTTCAGCTTTGGGGTAATATTGATGGAACTAATAACCGGAAGAAGAGCACTTGATGACAGTCAACCAGAGGATAGCATGCACCTTGTAACATGGTTCCGTAGAATGTATGTAAACAAAGACTCATTCCACAAGGCTATTGACCACACAATTGAGCTCAATGAGGAAACACTTGCGAGCATTCACACCGTGGCTGAGTTAGCTGGCCACTGTTGTGCAAGGGAGCCATATCAAAGGCCTGATGCAGGTCATGCCGTTAATGTGCTTTCTTCTCTTGTGGAACTTTGGAAACCATCTGATCAAAGTTCTGAAGATGTATATGGCATTGATTTAGACATGTCTTTGCCACAAGCATTGAAGAAGTGGCAGGCTTATGAAGGTAGAACCGAAATGGAGTCTTCTTCTTCTTTGCTCCTTCCTCCTAGCTTGGATAACACTCATACAAGCATACCTACGCGTCCATTTGGATTTGCTGAGTCTTTCACATCAGCAGATGGTAGGTGA 2814 0.3891 MKSHIAFLLSCFLILYAHAQDAPAMLALKTTLNPPQSLGWSDPDPCRWKHVVCSEQKRVTRIQIGHQGLQGTLPNSTVIQTLTQLERLELQFNNISGPLPSLNGLSSLQVLILSNNRFTSIPDDFFAGLPELQSVEIDNNPFKPWKFPDTIVNSSSLQNFSANSANVVGALPEIFSSLPTLTHLHLAFNNLEGVLPLSLSSSQVETLWLNGQKGNNLGGNVGVLQNMTSLTQVWLHSNAFTGPLPDFSGLQSLQDLNLRDNSFTGPVPGSLLGLKSLKVVNLTNNLFQGAVPEFGSGVEVDLDLGDDSNSFCLPRVGECDPRVEVLLSVVRVLGYPRRFAEDWKGNDPCADWIGVTCNGGGDITVVNFQKMGLEGSIAPEFALLKSLQRLVLADNNLTGSIPEELASLPGLVELNVTNNRLYGKIPSFKSNVVVTTNGNKDIGKDKPSPGPTSSHLGPLNLTTPNTMEENGGRRSSHVGVIVFAVIGGVVLVFVISFLAFCLFRMKQKRLSKVQSPNALVIHPRHSGSDNESVKIAVAGSSLSVADISGIGMQSRSEAGDIQMGEAGNMVISIQVLRNVTDNFSEKNILGQGGFGTVYKGELHDGTKIAVKRMECGAISGKGTTEFKSEIAVLTKVRHRHLVSLLGYCLDGNEKLLVYEYMPQGTLSKHLFNWMEEGLKPLEWNRRLTIALDVARAVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRRALDDSQPEDSMHLVTWFRRMYVNKDSFHKAIDHTIELNEETLASIHTVAELAGHCCAREPYQRPDAGHAVNVLSSLVELWKPSDQSSEDVYGIDLDMSLPQALKKWQAYEGRTEMESSSSLLLPPSLDNTHTSIPTRPFGFAESFTSADGR 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00470 937 MobiDBLite consensus disorder prediction 453 471 - -
Cca01g00470 937 Pfam Leucine rich repeat 84 141 IPR001611 GO:0005515
Cca01g00470 937 PANTHER OSJNBA0070M12.3 PROTEIN 17 937 - -
Cca01g00470 937 Pfam Leucine rich repeat N-terminal domain 323 358 IPR013210 -
Cca01g00470 937 Pfam Leucine rich repeat N-terminal domain 19 54 IPR013210 -
Cca01g00470 937 SUPERFAMILY L domain-like 39 429 - -
Cca01g00470 937 Gene3D Transferase(Phosphotransferase) domain 1 661 881 - -
Cca01g00470 937 ProSiteProfiles Protein kinase domain profile. 583 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00470 937 MobiDBLite consensus disorder prediction 439 471 - -
Cca01g00470 937 SMART serkin_6 583 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00470 937 Gene3D Ribonuclease Inhibitor 18 319 IPR032675 -
Cca01g00470 937 CDD STKc_IRAK 589 862 - -
Cca01g00470 937 Gene3D Phosphorylase Kinase; domain 1 548 660 - -
Cca01g00470 937 PANTHER RECEPTOR PROTEIN KINASE TMK1 17 937 - -
Cca01g00470 937 ProSiteProfiles Leucine-rich repeat profile. 107 128 IPR001611 GO:0005515
Cca01g00470 937 SMART LRR_typ_2 82 104 IPR003591 -
Cca01g00470 937 SMART LRR_typ_2 250 273 IPR003591 -
Cca01g00470 937 SMART LRR_typ_2 384 408 IPR003591 -
Cca01g00470 937 SMART LRR_typ_2 178 201 IPR003591 -
Cca01g00470 937 SMART LRR_typ_2 105 128 IPR003591 -
Cca01g00470 937 SMART LRR_typ_2 274 297 IPR003591 -
Cca01g00470 937 Pfam Protein kinase domain 584 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00470 937 ProSitePatterns Serine/Threonine protein kinases active-site signature. 708 720 IPR008271 GO:0004672|GO:0006468
Cca01g00470 937 ProSitePatterns Protein kinases ATP-binding region signature. 589 611 IPR017441 GO:0005524
Cca01g00470 937 SUPERFAMILY Protein kinase-like (PK-like) 563 867 IPR011009 -
Cca01g00470 937 Gene3D Ribonuclease Inhibitor 321 446 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00470 Cca-Chr1 5865414 5869162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00470 69 805 Receptor kinase-like Gene Family AT4G39400 31.322 1.24e-78 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Cca01g00470 Pkinase 4.7e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00470 01 5865414 5869162 Cca01g00470 01 5865414 5869162 ECH