Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00469 ATGAAACAAAACTTTGATCTTGAAGTGGTGGCCTCAGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAATATATCTATTCAAGAAACCTCTGCTGCTCCTTGTATTGACAACCTCACCAACTCTTCCAATGCCACTAATCCAATTGAACTTCATCTCCATTCAGATGGAATCTCTCTAGACTTAACTCTCAACTTCAACAACAATGACATAGTGGTTAGAGATTCAACAGGACTCTCATTCTCCAGCACTAGTGAGAGCAGCAATGATCCTCCCTCTCAAACTACTTCAGCAACCAACCCGCGAGTTTTCTCTTGCAATTACTGCAAGCGCAAGTTTTTCAGCTCGCAGGCTCTTGGTGGCCACCAGAATGCACACAAGAGAGAAAGAACATTGGCAAAGAGAGCTTTGCGGATGGGGTTTTTCTCTGAGAGGTATGCAAGTCTAGCATCTCTTCCTCTTCATGGTTCTTTGAGGTCCTTAGGGATAAAGGCACACTCTTCACTGCACCATGGTTTTTCACCAACAATAAGACCTCCTGAGATGAAAAGCAGTGCAAGATTTGAGCAAGGATATATTGGTCTTCCAATATTCTTGGAGGAGGATGAGGCAGAATTGTTGTGGCAAGGTAGTTACCATCAGGTTCCCTCTGAAGGAGGCCATACTCATGAAAATTTCACACCAAGTGGAAGTTCAAATTTGAGTTTTATTGGGGTCAATCCACCGGTTGACATAGAGAACTCAACACCTGAGTTAACATTGAAGCTTTGA 777 0.4324 MKQNFDLEVVASAEYESEVSSQVASNISIQETSAAPCIDNLTNSSNATNPIELHLHSDGISLDLTLNFNNNDIVVRDSTGLSFSSTSESSNDPPSQTTSATNPRVFSCNYCKRKFFSSQALGGHQNAHKRERTLAKRALRMGFFSERYASLASLPLHGSLRSLGIKAHSSLHHGFSPTIRPPEMKSSARFEQGYIGLPIFLEEDEAELLWQGSYHQVPSEGGHTHENFTPSGSSNLSFIGVNPPVDIENSTPELTLKL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00469 258 Gene3D Classic Zinc Finger 84 149 - -
Cca01g00469 258 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Cca01g00469 258 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 258 - -
Cca01g00469 258 PANTHER ZINC FINGER PROTEIN JAGGED 1 258 IPR045320 GO:0003700
Cca01g00469 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Cca01g00469 258 SUPERFAMILY beta-beta-alpha zinc fingers 101 133 IPR036236 -
Cca01g00469 258 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00469 Cca-Chr1 5853706 5856936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00469 104 258 C2H2 Transcription Factor Family AT1G66140 50.543 1.15e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca01g00469 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00469 01 5853706 5856936 Cca01g00469 01 5853706 5856936 ECH