Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00069 ATGGAGGGTGCGTTTGGGAATCCAATAGAGTGTTTGGGGAAAGGGTTTGATCTGACAAGTGATTTTCGATTGAAGTTTGCGAAGGGAAAGGGGAAGAGGTTGGTGCTGATTGACCAACTCAAGAAAAGAGACATTACGCTTCCTGTTCCTGGCGGACTCACCATTCCCGATGTTTCCGAGGATATCCGCTGCGACAAGGGGGACCGCCTTCGCTTCAAATCCGATGTTCTTCAATTCAACCAGATGTCTGAGTTGCTTAATCAAAAATCAGCTATACAAGGAAAAATTCCTTCTGGCTATTTTAACGCTCTTTTTGATTTGAGTGGTGAATGGTTTCGTGATGCTCATGACATCAAATATCTTGCCTTTGATGGTTATTTCATTTCACTCTACTATTTGCACCTCACTGCTTCACACCTCATTCTGCAAGACGAAGTAAAGAAGTCTGTTCCACCTCAGTGGGATCCAGCTTCATTATCCAGGTTCATTCAGACATACGGTACACACATAATAATAGGTATGGCTATTGGAGGTCAAGATGTAATCTGTGTCAAACAAAAACATTCTTCAAAGGTTCCGCCTGGTGATCTTAGAAGACATTTAGAAAATCTTGGAGATTTTTTGTTTTCAGATTTAAGAAGCCCTTCTCAACTACCAACGATCACCATAGAAGACAGACAAAAAGTTCCTGAGGTCTTTAATCGTGCGATGCAATCAAGCACAATGCAGCTTACCAGCATTTCAGAAACATCAAGCAAGGATGGCCTCACTATCATTTGTTCGAAAAGAGGAGGAAATGTGTTCAACCACAATCACTCAAATTGGCTCCAGACAGTGGCTTCTAATCCTGAAGCAATCCTCTTCAAGTTTGTACCTATTTCCTCACTTCTCACAGGAATTCGTGGAAGTGGCTATCTTAGTCATGCAATCAATTTGTATTTACGTTATAAGCCCCCTCCCGAAGATTTACAGTGCTTCTTGGAGTTCCAAATTCCAAGGCAATGGGCACCTATGTTTTATGAGCTACCTCTAAGGCATCAAAGGAAAAAGACTTCTTCCCCTTCCTTGCAATTCAGTCTCATGAGTCCCAAGCTTCATGTCAGCTCTGCACAGGTAGTAAGTGAAGAAAAGCCTGTGGTAGGCCTTCGCTTGTACTTAGAAGGCAGAAAATGTGACAAACTTGCAATACATGTAAACCACCTTTCAAGCCTCCCAAACACAATGATCCACTCTTCAGGCACATCTTTGTGGAGAGGTTCTGATTCTAATGATGATGAATTCAGCAGTGACCAGTTTCTGGAACCAATAAGGTGGAAGGGATTTGCAAACGTGTGCACCTCAGTGGTCAAGCATGACCCTAACTGGTTGCATGAATCAAGTGGTGTTTACATTGTAACAGGTGCACAACTCATTAGCAAAGGAAGTTGGCCAAAGAATGTGCTTCACTTGCGTCTCTTATATACCAACATACCAAATTGTAGTATCAGGAAGTCAGATTGGAGTGGTGCACCTGAGGCTTCAAGAAAATCATCTTTTTTCACAAATCTAAGCACAACGTTTTCATTCACGCAGCAACCAAGTGTCAATGCTAATACTCAGAAGCAGGCTCCAACTACAATTGACTCTGGTGTATATCCTGACGGTCCACCTGTGCCTGTTCGTTCTGGAAAACTGCTTAAATATGTGGATACAAGTGAGGTTGTGAGGGGTCCACATGATGCTCCTGGCCATTGGTTGGTAACAGCTGCTAAGCTTGTGACTGAGGGTGGCAAGATTGGATTGCAGGTCAAGTTTGCATTGTTAGACTACTAG 1812 0.4288 MEGAFGNPIECLGKGFDLTSDFRLKFAKGKGKRLVLIDQLKKRDITLPVPGGLTIPDVSEDIRCDKGDRLRFKSDVLQFNQMSELLNQKSAIQGKIPSGYFNALFDLSGEWFRDAHDIKYLAFDGYFISLYYLHLTASHLILQDEVKKSVPPQWDPASLSRFIQTYGTHIIIGMAIGGQDVICVKQKHSSKVPPGDLRRHLENLGDFLFSDLRSPSQLPTITIEDRQKVPEVFNRAMQSSTMQLTSISETSSKDGLTIICSKRGGNVFNHNHSNWLQTVASNPEAILFKFVPISSLLTGIRGSGYLSHAINLYLRYKPPPEDLQCFLEFQIPRQWAPMFYELPLRHQRKKTSSPSLQFSLMSPKLHVSSAQVVSEEKPVVGLRLYLEGRKCDKLAIHVNHLSSLPNTMIHSSGTSLWRGSDSNDDEFSSDQFLEPIRWKGFANVCTSVVKHDPNWLHESSGVYIVTGAQLISKGSWPKNVLHLRLLYTNIPNCSIRKSDWSGAPEASRKSSFFTNLSTTFSFTQQPSVNANTQKQAPTTIDSGVYPDGPPVPVRSGKLLKYVDTSEVVRGPHDAPGHWLVTAAKLVTEGGKIGLQVKFALLDY 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00069 603 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 1 327 IPR020864 -
Cca01g00069 603 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 7 603 IPR044663 GO:0006952|GO:0012501|GO:2000031
Cca01g00069 603 PANTHER OS02G0475300 PROTEIN 7 603 - -
Cca01g00069 603 SMART MACPF_8 118 315 IPR020864 -
Cca01g00069 603 Pfam MAC/Perforin domain 101 313 IPR020864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00069 Cca-Chr1 714392 719810 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00069 01 714392 719810 Cca01g00069 01 714392 719810 ECH
Cca01g00069 01 714392 719810 Cca09g01795 09 42635933 42641420 PCT