Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02226 ATGACTATTATAGAAAATCAAAGTGTTGCTTATGTCATCGCTTATATCATCGAGCGGTTCCCCCCCGCCCAGCTCATCAACATCTTACAAGACGCCGTCGTCCGCCATCCCGACGTTCTCTCATCCGTTCGCGCCGTTGCCGACACCGACATCTCCCAGCGCAAGCTCTTCATCCGTGGCCTCGGTTGGGACACCACCACCGACGGTCTCCGTTCCCTCTTTTCAACCTACGGTGAACTCGAAGAAGCCATCGTAATCGTCGATAAGGCAACCGGCAAATCGAAAGGTTATGGCTTCGTCACGTTCCGTCACGTGGACGGCGCCCTACTCGCCCTTCGTGAGCCTAGCAAGCGCATCGACGGGCGCGTAACAGTCACGCAGCTTGCCGCAGCTGGGAATTCAGGCTCCAACACCAACTCCACAGACACTGCTCTCCGCAAAATATATGTATCGAACGTGACGCCGGATCTTGCAGCAGACAAGCTTCTTGCCCACTTCTCATTGTATGGGGAGATTGAGGAAGGCCCATTGGGCTTCGATAAACAGACAGGACGGTCAAAGGGGTTCGCTCTGTTCGTTTATAAGACCCCGGAGGGGGCACAGGCTGCCCTTTTGGAACCCGTGAAGAATGTGGAGGGGCGGCAGTTAAATTGCAAGCTGGCAATAACAGATGGGAAGCAGCAAGGGGTGCGCGGTGGCGGTGGTGGGCCGGACGCTGTTCAGGGTCGTGGGAATGCACATGGCAATGGAATTGGGATGGCTCCAACAGCTGGGCCTGGGTCGGGTCAATATGGTATGGGATCTTATGGAGGGTATGCTGGTGGCCATCAGGGTCAGCCTCCCATGAATAATCATCCTATGAATTCTTCTGTTGGTGTGGCGAATCAAGCTCCATCTTCAATGGGTGGTGCTGGTGGGTATGGTGCTGGGCTTGGTGGTCATTATGGAGGCTACGGTGGGCCCGCAGCAACAGGTTTtggtagtggtggtggtggtggttatggaggaggtagtggtggggctggtgctggtgctggtggtggacatggtggttccgctggtggtttgggtagtgctggtTCCATAATCAGCATCATCCTCCTGCCGGGGCGTCACCTGTACCAAGGGTTCCACCTAGTTCTATGTATCCAAATGTGCCTCCTTACTACTAAGGTGTATCATCGCTTGTTGGTGCAGATCTTTGTGTGCTTCTGGTGA 1218 0.4992 MTIIENQSVAYVIAYIIERFPPAQLINILQDAVVRHPDVLSSVRAVADTDISQRKLFIRGLGWDTTTDGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNSTDTALRKIYVSNVTPDLAADKLLAHFSLYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGAQAALLEPVKNVEGRQLNCKLAITDGKQQGVRGGGGGPDAVQGRGNAHGNGIGMAPTAGPGSGQYGMGSYGGYAGGHQGQPPMNNHPMNSSVGVANQAPSSMGGAGGYGAGLGGHYGGYGGPAATGFGSGGGGGYGGGSGGAGAGAGGGHGGSAGGLGSAGSIISIILLPGRHLYQGFHLVLCIQMCLLTTKVYHRLLVQIFVCFW 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02226 405 PANTHER GEO13361P1-RELATED 16 343 - -
Car07g02226 405 Gene3D - 133 239 IPR012677 -
Car07g02226 405 CDD RRM_RBM24_RBM38_like 146 221 - -
Car07g02226 405 Gene3D - 45 132 IPR012677 -
Car07g02226 405 PANTHER UBP1-ASSOCIATED PROTEIN 2C 16 343 - -
Car07g02226 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 131 IPR000504 GO:0003723
Car07g02226 405 CDD RRM_RBM24_RBM38_like 54 129 - -
Car07g02226 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 214 IPR000504 GO:0003723
Car07g02226 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 123 IPR000504 GO:0003723
Car07g02226 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 227 IPR000504 GO:0003723
Car07g02226 405 SMART rrm1_1 55 127 IPR000504 GO:0003723
Car07g02226 405 SMART rrm1_1 147 219 IPR000504 GO:0003723
Car07g02226 405 SUPERFAMILY RNA-binding domain, RBD 42 131 IPR035979 GO:0003676
Car07g02226 405 SUPERFAMILY RNA-binding domain, RBD 139 250 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02226 Car-Chr7 32450634 32454794 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02226 142 221 C2H2 Transcription Factor Family AT2G19380 41.250 1.74e-10 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g02226 07 32450634 32454794 Car07g02226 07 32450634 32454794 ECH