Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g02141 ATGGATCTTTTGTGCGATGCGTATTCGAATGCCTCAGACAACGACGAAGAAGAACAACCCAAACGACATAAATCATCTTACACTTCCACTAATCCACCAAAACCCTATTTCCCTTCTCCTATTTCCAACCTTCATACACAACAACCTCTCATTCCCGGTAGTTATGTTTCCAAACGACAACGCGCATATATGAGTTCCATCTCCACTACACCGGTTGTTCCTCATTCACCTTCATTCACATTATCTGGGAGTATCTCGGAGGCTGATATACCCCACAACATCTTAGCATTGTTGAAAAGTAACGCAAAGGGTCATCATAACCTAAACTCGGTATCTGAGAAACTATCTGCAACTCTATCTGGCCATACAAGAGCTGTCAATGCTATTCATTGGTCATCAACTCATGCTCACCTCCTTGCATCTGCTGGGATGGACAATATGGTTTGCATATGGAATGTATGGAGCAGAGATAAGAAGAAAGCATGTGCCCTAAATTTCCACAATGCAGCAGTGAAAGATGTGAAATGGTCCCAACAAGGACTCTTCTTGCTTTCTTGTGGATATGATTGCACATCAAGGTTGGTTGATGTTGAAAAGGGGATGGAAACTCAGGTTTTCAGAGAAGATCAAATGGTTGGAGTTATAAAGTTCCACCCAGACAATTCAAGTCTCTTTCTTTCTGGAGGATCAAAGGGCTATATCAAACTATGGGATATCAGAACTGGCAAAGTTGTGCATAACTACCATCGGAATTTAGGTTCTGTTCTAGATGTTGAGTTTACAACAAATGGGAAGCAATTCATCTCTTCTAGTGATGTTTCTGGGAGCAATATCAGTGAGAATTCTATTATTGTGTGGGATGTGTCAAGACAAGTACCGTTGTCTAATCAGGTGTATGTGGAAGCTTATACTTGTCCCTGCGTTAGGTGCCACCCCTTTGATCCAGTTTTTGTTGCCCAATCAAACGGAAATTATGTTGCAATCTTTAGTACCACCCCACCATACAGACTCAACAAATATAAGAGATATGAGAACCATGGGGTTTCTGGGTTCCCAATTAAGTGCAATTTCAGCTTAGATGGGAAAAAGCTTGCATCTGGCTCTTCAGATGGATCTATTTACCTTTATGATTATCAATCATCCAAAGTTTTAAAGAAAATCAAGGCCTTTGACCAAGCATGTATGGACATTGCCTTCCACCCAGTTATGCCTAATGTTATTGCTTCATGCTCATGGGATGGAAGTATTTTGGTATTTGAGTAA 1263 0.4086 MDLLCDAYSNASDNDEEEQPKRHKSSYTSTNPPKPYFPSPISNLHTQQPLIPGSYVSKRQRAYMSSISTTPVVPHSPSFTLSGSISEADIPHNILALLKSNAKGHHNLNSVSEKLSATLSGHTRAVNAIHWSSTHAHLLASAGMDNMVCIWNVWSRDKKKACALNFHNAAVKDVKWSQQGLFLLSCGYDCTSRLVDVEKGMETQVFREDQMVGVIKFHPDNSSLFLSGGSKGYIKLWDIRTGKVVHNYHRNLGSVLDVEFTTNGKQFISSSDVSGSNISENSIIVWDVSRQVPLSNQVYVEAYTCPCVRCHPFDPVFVAQSNGNYVAIFSTTPPYRLNKYKRYENHGVSGFPIKCNFSLDGKKLASGSSDGSIYLYDYQSSKVLKKIKAFDQACMDIAFHPVMPNVIASCSWDGSILVFE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g02141 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 247 IPR001680 GO:0005515
Car07g02141 420 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 420 - -
Car07g02141 420 ProSitePatterns Trp-Asp (WD) repeats signature. 139 153 IPR019775 -
Car07g02141 420 SMART WD40_4 338 377 IPR001680 GO:0005515
Car07g02141 420 SMART WD40_4 112 152 IPR001680 GO:0005515
Car07g02141 420 SMART WD40_4 380 420 IPR001680 GO:0005515
Car07g02141 420 SMART WD40_4 157 196 IPR001680 GO:0005515
Car07g02141 420 SMART WD40_4 241 287 IPR001680 GO:0005515
Car07g02141 420 SMART WD40_4 199 238 IPR001680 GO:0005515
Car07g02141 420 MobiDBLite consensus disorder prediction 1 43 - -
Car07g02141 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 153 IPR001680 GO:0005515
Car07g02141 420 Pfam WD domain, G-beta repeat 114 152 IPR001680 GO:0005515
Car07g02141 420 Pfam WD domain, G-beta repeat 215 238 IPR001680 GO:0005515
Car07g02141 420 Pfam WD domain, G-beta repeat 166 194 IPR001680 GO:0005515
Car07g02141 420 Pfam WD domain, G-beta repeat 345 377 IPR001680 GO:0005515
Car07g02141 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 386 IPR001680 GO:0005515
Car07g02141 420 Gene3D - 97 420 IPR015943 GO:0005515
Car07g02141 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 119 153 - -
Car07g02141 420 SUPERFAMILY WD40 repeat-like 108 419 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g02141 Car-Chr7 28022033 28040001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g02141 112 290 U-box Gene Family AT2G33340 26.087 5.45e-09 56.2