Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01183 ATGGGATTCTCTCAAATGGCTTCTCTCTTGTTGTGCTTTACCCTTTTTCTTTTAGCTTCTGCCTCTTCCAGAAATTTGCCTATTATACCCTTTGATGAAGGCTACACACCTTTGTTTGGTGATAATAACGTTTTCGTTCATACAGATGGCAAATCGGTTCATCTTTCACTCGATGAAAGAACAGGTTCTGGATTTGTGTCTCATGATCTTTACCTTCATGGCTATTTCAGTGCTTCCATTAAGTTACCTGCTGACTACACTGCTGGAGTTGTGGTTGCTTTTTATATGTCAAATGGTGACATGTATGAGAAGAACCATGATGAAATAGACTTTGAGTTTTTGGGAAACATTAGAGGCAAAGACTGGAGGATTCAGACTAATGTTTATGGCAATGGAAGTACCAGCATTGGCAGAGAAGAAAGATATGGTCTCTGGTTTGATCCTGCTGAGGATTTTCATCAGTACAGTATTCTCTGGACAGATTCTCTTATTATATTTTATGTGGATAATATTCCTATTCGTGAAGTTACGCGAACAGAATCTATGGGAGGAGACTTCCCCGCCAAGCCTATGACTCTCTATGCTACAATATGGGATGCATCCGATTGGGCTACCAATGGTGGAAAATACAGAGTAAATTACAAATATGCACCATATATTGCTAAGTTCTCCGACCTTGTCCTACATGGGTGTGCGGTCGATCCAATCGAGCATGTTGCCAAGTGTGACACTGCTTCAGATTCCAAATCCGTTCCTTCTGGTGTTACACCAGTACAAAGAATCAAAATGGAGAACTTCAGGAAGAAGCACATGACATACTCTTATTGTTACGACAAAATCAGATACAAAGCCCCTCCATCCGAGTGTGCAATCAATCCTCAAGAAGCCGAAAGGCTTAGAAAATTCGACCCTGTTACGTTTGGTAGTGGTCGTCATCGTCATGGAAAACGACACCATCACAACCGAGGAAGCCAGGCAGAAGCTGTTTCATTCTAA 996 0.4147 MGFSQMASLLLCFTLFLLASASSRNLPIIPFDEGYTPLFGDNNVFVHTDGKSVHLSLDERTGSGFVSHDLYLHGYFSASIKLPADYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTSIGREERYGLWFDPAEDFHQYSILWTDSLIIFYVDNIPIREVTRTESMGGDFPAKPMTLYATIWDASDWATNGGKYRVNYKYAPYIAKFSDLVLHGCAVDPIEHVAKCDTASDSKSVPSGVTPVQRIKMENFRKKHMTYSYCYDKIRYKAPPSECAINPQEAERLRKFDPVTFGSGRHRHGKRHHHNRGSQAEAVSF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01183 331 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 223 IPR000757 GO:0004553|GO:0005975
Car06g01183 331 Pfam Glycosyl hydrolases family 16 33 215 IPR000757 GO:0004553|GO:0005975
Car06g01183 331 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 27-RELATED 9 310 - -
Car06g01183 331 Gene3D - 18 289 - -
Car06g01183 331 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 293 IPR013320 -
Car06g01183 331 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 253 289 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Car06g01183 331 MobiDBLite consensus disorder prediction 303 331 - -
Car06g01183 331 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 9 310 IPR044791 GO:0004553
Car06g01183 331 CDD GH16_XET 29 289 IPR016455 GO:0010411|GO:0016762|GO:0042546
Car06g01183 331 PIRSF EndGlu_transf 1 294 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01183 Car-Chr6 11661869 11664807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01183 1 330 Glycoside Hydrolase AT1G14720 67.267 3.07e-170 474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01183 06 11661869 11664807 Car06g01183 06 11661869 11664807 ECH