Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00245 ATGGACGACGTGAAAGACAAGGTTAAAGGTTTAATGAAAAAAGTCAACAACCCTTTCTCTTCCTCAACATCTGGAAAATTCAAGGGCCAAGGTAGAGTCTTGGGAtcatcatcatcttcttcttcttcttatacaccttctAATTCCAATCCTACCCCTCGCCCTAATCCATCTCCCTCTCAGaaccctaaccctaattccaaacccaaacctaaacccaCTTCACCGGTCGCTTCAGATAATAGCAGAATCGACAAAGCTCGTAAACCTGGAGATGGGTTTGACCCTTTTGATTCTCTAGTCACTTCATCGCAGAGATCTCAAAATGGGTATTCACTTAATGTATATGAATGTCCAATTTGTAAAAAACCCTTTAGATCAGAAGATGAGGTTTCTGAACACGTGGATAATTGTTTGAGTAACCCAACTGAGTCTATTGATGGTGATGAAAATTGTGTATCAGAATTGCAAGAGAGTGAAGTTGAGTCTAATACTGAATTGGAGATTTTTATTGGCACTTATGTTTCAGGGAAACCATCTGAAGGATCGATCGATGTTGTTCTTAAATTATTGAGGAATATTGTTAGGGAACCTGAGAATGTTAAGTTTAGGAAGATTAGGATGAATAATCCTAAGATTAAAGAAGCTATTGCTGATGTTATTGGTGGAGTTGAATTGCTTAGTTTTTTAGGGTTTGAACTTAAGGAGGAGAATGGAGAGACATGGGCATTGATGGAGGCTCCTAGAGAGGAGGAGAAAATAAATTTTATTAAGAAAGCAATAGTGTTATTGGAACCACAACTTGTGGTACAAGATCCTCCTAAGAGAGACAACTTGACGTCTACGGCTTCTGTTGAGAAAGTAGTCACGGCCGAACCAAAAAAGATCGACAGACAGGTGAAAGTCTTCTTTGCTGTCACTGAAAGTGTTGCAGCTAAAATTGAGCTACCAGATTCCTTCTACAAACTTTCAGTTGACGAGGCGAGAAGAGACGCTGAACTAAGGAGAAAAAGGATTGAAGAGTCTCAGCTTTTAATCCCCAAGTCACTTAAAGAAAAGCAAGCTAAAGCTGCAAGGAGGAGATACACAAGAACTATTATTAGGATTCAGTTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAACCAACTACTGCTCTCTATGAGTTTGTGAGCTCTGCGTTAAAAGAACAAGGTTTGGAATTTGAGCTAATGCATCCAATAGTCGTCCAACGGCGTGTGATCCCATGTTTCCCGAAAGCAGGGCAAAAGGTCAAAACAATAGAGGAAGAAGACCTGGTACCTTCTGCTCTAATCAAGTTCAAGCCTCTAGAAACAGATTCTGTTGTTTTCACAGGTCTCAAAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGGTTAA 1416 0.3785 MDDVKDKVKGLMKKVNNPFSSSTSGKFKGQGRVLGSSSSSSSSYTPSNSNPTPRPNPSPSQNPNPNSKPKPKPTSPVASDNSRIDKARKPGDGFDPFDSLVTSSQRSQNGYSLNVYECPICKKPFRSEDEVSEHVDNCLSNPTESIDGDENCVSELQESEVESNTELEIFIGTYVSGKPSEGSIDVVLKLLRNIVREPENVKFRKIRMNNPKIKEAIADVIGGVELLSFLGFELKEENGETWALMEAPREEEKINFIKKAIVLLEPQLVVQDPPKRDNLTSTASVEKVVTAEPKKIDRQVKVFFAVTESVAAKIELPDSFYKLSVDEARRDAELRRKRIEESQLLIPKSLKEKQAKAARRRYTRTIIRIQFPDGVVLQGVFAPWEPTTALYEFVSSALKEQGLEFELMHPIVVQRRVIPCFPKAGQKVKTIEEEDLVPSALIKFKPLETDSVVFTGLKNELLEISEPLVNG 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00245 471 Gene3D - 176 263 - -
Car06g00245 471 CDD PUB 176 261 - -
Car06g00245 471 SUPERFAMILY PUG domain-like 179 262 IPR036339 -
Car06g00245 471 MobiDBLite consensus disorder prediction 1 106 - -
Car06g00245 471 MobiDBLite consensus disorder prediction 50 72 - -
Car06g00245 471 SMART PGNneu 182 249 - -
Car06g00245 471 Gene3D - 354 447 - -
Car06g00245 471 MobiDBLite consensus disorder prediction 15 49 - -
Car06g00245 471 SUPERFAMILY Ubiquitin-like 333 444 IPR029071 -
Car06g00245 471 Gene3D Classic Zinc Finger 112 142 - -
Car06g00245 471 ProSiteProfiles UBX domain profile. 360 444 IPR001012 GO:0005515
Car06g00245 471 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 470 - -
Car06g00245 471 Pfam UBX domain 362 410 IPR001012 GO:0005515
Car06g00245 471 Pfam PUB domain 181 249 IPR018997 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00245 Car-Chr6 2554610 2558352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00245 1 392 C2H2 Transcription Factor Family AT2G01650 56.897 2.31e-147 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car06g00245 UBX 4.1e-05 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00245 06 2554610 2558352 Car06g00245 06 2554610 2558352 ECH