Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00238 ATGAAACTAGGTTTGAAGCTTCTTCATGAAAGGGCCAAACTTGGGTCTTTTTGGTGGCCATATATAAGTAATCTTCCAGAGTCTTACACTGTTCCTATTTTCTTTCCTGGGGAAGATATTAAGAATTTGCAGTACGCTCCTCTTCTTCACCAGGTAAACAAAAGATGCCGGTTTCTTCTTGATTTCGAGCAACAAGTCAAGCGTGCACTAGTTGGTCTTGCACCAGATAAACATCCTTTTGGTGGCCAAGAAGTAGATGCGTCGTCTCTTGGATGGGCAATGTCAGCAGTCTCGTCTAGAGCATTCCGGTTACATGGTAACAAGCAATCAAATGGGATAAACTTTGACATACCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTCAATCCGAATGCTAGAATTGTTCAGGAACAAGAGGCCGGTAGCACAAAGATGCGGGTGAAGGTTGTGGCTGAGAAAGCAATCAAAGAAGATGACCCTTTATTACTTTGTTATGGATGTTTAAGCAACGATCTTTTCCTTCTTGATTATGGTTTTGTGATACATTCAAACCCTTATGACTGTATCGAGCTCAAATATGATGGCGCTCTTTTGGATGCTGCAAGTATTGCAGCTGGAGTTTCTTCACCAAAATTCTCCACACCTGCTCCGTGGCAGCAACTTATTTTATCTCAGCTAAATCTAGCTGGAGAAGCTCCAGATCTTAAGGTGAGTGTAGGTGGTCAAGAAATAATAGAAGGGCGCTTGTTAGCTGCACTGAGAGTACTCCTTACAAGTGATATGGAAACTGTTCAAAAGTATGACCTCAACACACTCAAGTCTTTAGATGCTGAGGCTCCACTTGGTGTTGCAAACGACATTGCAGTATTTCGTACTCTGATTGCTCTGTGTGTCATTGCACTGGGACACTTTCCCACCAAGTTAATGGATGATGAATCTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAACTAGCCATTCAATTCAGAATCCAAAAGAAGTCTGTAATTATAGATGTAATGAAAAATCTCTCAAGGAGGGTAAAGCTTCTTTCATCAAAGGAGACAGTGACTGCTGAAAGCTAA 1095 0.4155 MKLGLKLLHERAKLGSFWWPYISNLPESYTVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFEQQVKRALVGLAPDKHPFGGQEVDASSLGWAMSAVSSRAFRLHGNKQSNGINFDIPMMLPLIDMCNHSFNPNARIVQEQEAGSTKMRVKVVAEKAIKEDDPLLLCYGCLSNDLFLLDYGFVIHSNPYDCIELKYDGALLDAASIAAGVSSPKFSTPAPWQQLILSQLNLAGEAPDLKVSVGGQEIIEGRLLAALRVLLTSDMETVQKYDLNTLKSLDAEAPLGVANDIAVFRTLIALCVIALGHFPTKLMDDESLLKQGASGSTELAIQFRIQKKSVIIDVMKNLSRRVKLLSSKETVTAES 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00238 364 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 179 358 IPR036464 -
Car06g00238 364 CDD SET_LSMT 1 183 - -
Car06g00238 364 PANTHER F21J9.27 1 361 - -
Car06g00238 364 Pfam SET domain 33 169 IPR001214 GO:0005515
Car06g00238 364 Gene3D set domain protein methyltransferase, domain 1 1 183 - -
Car06g00238 364 SUPERFAMILY SET domain 3 187 IPR046341 -
Car06g00238 364 Pfam Rubisco LSMT substrate-binding 219 339 IPR015353 -
Car06g00238 364 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 1 361 - -
Car06g00238 364 Gene3D - 215 360 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00238 Car-Chr6 2500376 2503740 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car06g00238 SET 5.6e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00238 06 2500376 2503740 Car06g00238 06 2500376 2503740 ECH