Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00220 atggtgaaagcggcgagcgataatggTTCTTGCTGTTCGGTGGcacctttcttgaacaaatgttacgatatggttgaagatcattccaccgactccatcatctcttggactcaacgcggtgacagttttatcatctccaaccactctcaattctctctcactcttcttcctaattatttcaaacacaacaatttctccagcttcgtcaggcaactcaatatctatGGTTTCAGGAAAATTGATACAGATCACTGGGAATTTGCCAATGAAAACTTCATCAGGGGTCaaaagcacttgttgaagaatatacgtagaaggaaacatccACATGTTGCAGATCAGCAAAAAACATTGCCGCCAAAAGAATCTTCTGAAAAACCATCACAAGAAGCAAAGAATCACAGCCTTTGGAAAGAAGTTGAGAATCTTAAGTCTGATAGAAATTCCCTCACGCAAGAGTTGGTCAAACATAAGCAGCATCTGGAATCTTCTGAGAGTAAGTTGCTTATACTGAGTGATCGCCTTGATGGAATGGAGAAGAATCAGCAGCAGATGCTATCGTTTTTGGTCATGGTCGTGCAATGCCCTGGATTCATGGTTCAGCTGCTTCACCCTAAGGAAAATAACTGGCGTGTGGCTGCTGAGAATTTGTTGGACCAAGGTAAACAAGATGACACCCCAGTTTCTTCTGACAGAATGATTGTAAAGTACAAGCCACCTGTAGGTGAAAGACTAAAGCCTGTAGTTCCGCAATCTCCTAAGCAACCAGAACCTGAGCTTTCTGCAGATGGGTTAAAAGACTTGTGCATCAGTTCCGAGTTCTTGAAATTGCTTCTAGATGAGAAATTGAGTCCATTAGATAATCCTTCTCCGTTTCTTGTACCGGATTTCCCGGATGATGGTTCGTGGGAACAACTCTTTTTAGGCAGTCCTTTCCTCGAAAATGCTGAAAACACTGATCATGAAAATGAGGGGGCCACTGTTAGTGGAATGGAGATGGAACCCACCATATCTGAAATGCCAAATGAGAGATCTGCTTTTGAAGCGATGATTGTAGAAATGGAGAAAACTCAAGCATGA 1080 0.3296 MVKAASDNGSCCSVAPFLNKCYDMVEDHSTDSIISWTQRGDSFIISNHSQFSLTLLPNYFKHNNFSSFVRQLNIYGFRKIDTDHWEFANENFIRGQKHLLKNIRRRKHPHVADQQKTLPPKESSEKPSQEAKNHSLWKEVENLKSDRNSLTQELVKHKQHLESSESKLLILSDRLDGMEKNQQQMLSFLVMVVQCPGFMVQLLHPKENNWRVAAENLLDQGKQDDTPVSSDRMIVKYKPPVGERLKPVVPQSPKQPEPELSADGLKDLCISSEFLKLLLDEKLSPLDNPSPFLVPDFPDDGSWEQLFLGSPFLENAENTDHENEGATVSGMEMEPTISEMPNERSAFEAMIVEMEKTQA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00220 359 MobiDBLite consensus disorder prediction 112 134 - -
Car06g00220 359 Gene3D - 10 107 IPR036388 -
Car06g00220 359 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g00220 359 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g00220 359 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g00220 359 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g00220 359 Coils Coil 140 181 - -
Car06g00220 359 MobiDBLite consensus disorder prediction 105 134 - -
Car06g00220 359 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 344 IPR027725 -
Car06g00220 359 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g00220 359 SUPERFAMILY "Winged helix" DNA-binding domain 13 106 IPR036390 -
Car06g00220 359 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g00220 359 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 1 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00220 Car-Chr6 2355894 2358450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00220 14 311 HSF AT1G67970 46.732 1.25e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car06g00220 HSF_DNA-bind 1.2e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00220 06 2355894 2358450 Car06g00220 06 2355894 2358450 ECH