Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00207 ATGGTGAAGGTTGAATTTAATTTCCTTTTACTTTTGGTGTTTTGTATTTTCATCATTTCAGCAATGTGTCAAGATGTTGAGGTTATGAATATTTTAAAAAACACCATTAATGCTCCAATTACCTTCCAATGGACAGATCCTGATGTATGTAAATGGAAACATATTCAATGTGATTGGAGAAAACGTGTTACTGCTATTCAAATAGGAAACCAAAATCTCCAAGGCTCTCTCCCAAAGGAACTTGTCATGCTCACAGCTTTGCAACGTTTCGAGTGTCAAGGCAATGGTCTCACAGGTCCATTCCCTTATCTATCAAAATCATTGCAAAGACTTGTAATTCATGACAATAAATTTAGCTCCATGCCCACTGATTTCTTCAAAGGAACAAGTAGTTTGCAAGAAGTGAGAATTGATGATAACCCTTTCTCTCCATGGCATATTCCTATTTCTCTCAAAGATTGTGTTGCTCTTCAAATTTTTAGTGCTCAAAGTGCTGGCTTAGTTGGGACTATTCCAGATTTTTTTGGAAGAGATGGTCCATTCCCTGGGTTGGTTTATTTGGCACTGTCTAGTAACTCTTTAGAAGGTGTTTTGCCTGCAAGTCTTTCAGGTAGTTCAATTGAGATTCTTTTGGTAAATGGACAAAATAGCAACGCTAAACTTAGTGGCACTCTTTCTGTGTTACAAAACATGAAATCTTTGAAACAAGTTTGGGTTAATGGTAATTCATTTACAGGTCCTATACCTGATTTGTCACTTCTTGTTCATTTATCTGATGTTAATTTAAGGAATAATCAGTTGACTGGTGTTGTTCCACCTTCTCTTATGAACCTTCCAAGTTTGCAAGTTGTTAACTTGACAAACAATTATCTTCAAGGTTCACCTCCTAAGTTTAGAGATGGTGTTGGAGTTGATAATAATATGGATGGTGGGAGAAACCAATTTTGCACAAATGTTATTGGACAACCATGTAGTCCTCTTGTCAATGCATTGCTATCTGTTGTTGAACCTTTGGGTTATCCTTTACAGTTTGCTGAAAGTTGGCAGGGTAATGACCCTTGTGCTAATAAATGGTTAGGGATAGTTTGCTCTGGTGGAAATGTTTCAGTTATTAACTTTCAAGGCATGGGAATAACTGGCACTATTTCTCCAAGTTTTGCCAACCTTTCATCTTTGAGAAAATTGCTTCTTGCAAACAATGGTATCACTGGTACCATACCAAATGAACTTACTAGTATGCCTTTTTTACAAGAGTTGGATGTTTCCAACAATCAATTATATGGTCGTGTGCCGTCGTTTCGTAAAGGTTTGGTTGTTAAATTTGGTGGGAATCCAGATATTGGAAAGGATAAACCTAGTAGTACTTCAAGTGGCACAGGTTTCAGAAGCAGTGATAACATAACAAATTTTGTTGGTATCATTGTTGGAATTGTGTTGGGGATTTTCATTTTTCTTGCTATTGGGGCACTTGTACTTGTTAGTTTTGGGAAAAAGTTGACAAGTCATGCGAAAAAAGGTAAAAATCATGATGCACTAGTGGTACATCCTCTTGTTCAAGGGGATGAAAATATTGCAAAGGTAAGTGTGATTGTTAGTGGTGAAGGAAGTGTTGCATTAAGTCCCTCTGGAAATGTTTATGAATCTAGTAACTTGGTGATATCAATTCAAGTTTTGAGAGACGTTACAAATAATTTTTGTGAGGAAAAGATAATTGGGAAAGGTGGTTTTGGCACTGTATATAAAGGGGAATTGCATGATGGAACAGAAATTGCTGTGAAAAGAATGCAATCAGGAGTGGTGAATGAGAAAGAGCCAAGTGAATTCACCTCTGAGATTACAGTGCTTACAAAGGTTCGACACAAACATTTGGTTGCACTATTGGGGTATTGTTTGGATGGAAATGAAAGACTTTTGGTATATGAATACATGCCTCAAGGTGCTCTTAGTAAACACTTGTTCAATTGGAAAGAGGAAGGGACAAAACCATTGGAATGGAAGACAAGGCTTAGCATTGCCTTGGATGTTGCTAGAGGTGTGGAATATCTTCATGGGTTAACCCAACAAACCTTTATCCATAGAGATCTCAAACCATCCAACATTTTGCTTGGAGATGATATGCGGGCTAAAGTATCAGACTTTGGATTGGTTCGACTTGCTCCTGAAGGAAAAGCTTCATTTCAAACCAAACTTGCTGGAACTTTTGGATATATGGCACCAGAATATGCAGCCACAGGAAGATTAACAACAAAAGTTGATGTATATAGTTTCGGTGTCATTCTTATGGAGATCATAACAGGAAGAAGAGCGCTTGATGACAGTCAACCAGAAGAGAACATCCATCTCGTTACATGGTTTCGTAGGATGTTACAAAACAAGGAATCTTTTCAAACGATCATCGACCCAAAAATTGAGGTTGATGAGGAAACCTATGTGAGCATTAACACTGTTGCTGAGCTGGCAGGACATTGTAGTGCAAGGGAGCCTTATCAACGTCCTGACATGAGTCATGTAGTGAATGTGTTATCACCTCTTGTTGAAGTGTGGAAGCCTACAAAACAAGATGATGAAGACATGTATGGAATCAACTTTGATATGACACTACCAGAAGCACTCCAAAGGTGGAAAGCTTTTGAAGGAAGAAGCACATTCGATTTAACTCATCATCATTCATAA 2673 0.3782 MVKVEFNFLLLLVFCIFIISAMCQDVEVMNILKNTINAPITFQWTDPDVCKWKHIQCDWRKRVTAIQIGNQNLQGSLPKELVMLTALQRFECQGNGLTGPFPYLSKSLQRLVIHDNKFSSMPTDFFKGTSSLQEVRIDDNPFSPWHIPISLKDCVALQIFSAQSAGLVGTIPDFFGRDGPFPGLVYLALSSNSLEGVLPASLSGSSIEILLVNGQNSNAKLSGTLSVLQNMKSLKQVWVNGNSFTGPIPDLSLLVHLSDVNLRNNQLTGVVPPSLMNLPSLQVVNLTNNYLQGSPPKFRDGVGVDNNMDGGRNQFCTNVIGQPCSPLVNALLSVVEPLGYPLQFAESWQGNDPCANKWLGIVCSGGNVSVINFQGMGITGTISPSFANLSSLRKLLLANNGITGTIPNELTSMPFLQELDVSNNQLYGRVPSFRKGLVVKFGGNPDIGKDKPSSTSSGTGFRSSDNITNFVGIIVGIVLGIFIFLAIGALVLVSFGKKLTSHAKKGKNHDALVVHPLVQGDENIAKVSVIVSGEGSVALSPSGNVYESSNLVISIQVLRDVTNNFCEEKIIGKGGFGTVYKGELHDGTEIAVKRMQSGVVNEKEPSEFTSEITVLTKVRHKHLVALLGYCLDGNERLLVYEYMPQGALSKHLFNWKEEGTKPLEWKTRLSIALDVARGVEYLHGLTQQTFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKASFQTKLAGTFGYMAPEYAATGRLTTKVDVYSFGVILMEIITGRRALDDSQPEENIHLVTWFRRMLQNKESFQTIIDPKIEVDEETYVSINTVAELAGHCSAREPYQRPDMSHVVNVLSPLVEVWKPTKQDDEDMYGINFDMTLPEALQRWKAFEGRSTFDLTHHHS 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00207 890 SMART serkin_6 565 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00207 890 CDD STKc_IRAK 571 844 - -
Car06g00207 890 ProSitePatterns Protein kinases ATP-binding region signature. 571 593 IPR017441 GO:0005524
Car06g00207 890 Gene3D Transferase(Phosphotransferase) domain 1 643 866 - -
Car06g00207 890 Pfam Protein tyrosine and serine/threonine kinase 568 840 IPR001245 GO:0004672|GO:0006468
Car06g00207 890 ProSitePatterns Serine/Threonine protein kinases active-site signature. 690 702 IPR008271 GO:0004672|GO:0006468
Car06g00207 890 Pfam Leucine Rich repeats (2 copies) 391 426 IPR025875 -
Car06g00207 890 ProSiteProfiles Protein kinase domain profile. 565 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00207 890 SUPERFAMILY L domain-like 329 436 - -
Car06g00207 890 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 3 885 - -
Car06g00207 890 Gene3D Ribonuclease Inhibitor 23 322 IPR032675 -
Car06g00207 890 Gene3D Phosphorylase Kinase; domain 1 534 642 - -
Car06g00207 890 Pfam Leucine rich repeat N-terminal domain 25 58 IPR013210 -
Car06g00207 890 Pfam Leucine rich repeat N-terminal domain 329 364 IPR013210 -
Car06g00207 890 PANTHER OSJNBA0070M12.3 PROTEIN 3 885 - -
Car06g00207 890 SUPERFAMILY Protein kinase-like (PK-like) 546 850 IPR011009 -
Car06g00207 890 SMART LRR_typ_2 278 300 IPR003591 -
Car06g00207 890 SMART LRR_typ_2 389 413 IPR003591 -
Car06g00207 890 SMART LRR_typ_2 254 277 IPR003591 -
Car06g00207 890 SMART LRR_typ_2 106 128 IPR003591 -
Car06g00207 890 SMART LRR_typ_2 181 204 IPR003591 -
Car06g00207 890 Gene3D Ribonuclease Inhibitor 327 451 IPR032675 -
Car06g00207 890 SUPERFAMILY L domain-like 23 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00207 Car-Chr6 2247100 2250874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00207 19 857 Receptor kinase-like Gene Family AT1G55610 28.918 1.74e-85 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Car06g00207 PK_Tyr_Ser-Thr 4e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00207 06 2247100 2250874 Car06g00207 06 2247100 2250874 ECH