Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00204 ATGGGTCTTCAATTGAAGATGCAGACTCAGCAACACCCTTTGGATTTGAAGTTACATGAACAAAATGGGAACAAAAGAAAATACACATTTATTCAGGCACATAGAGCTTGGCTTCTTAAGTTTTTGTTGCTATGGATTCTTCTGATGGCTATAATTGGTTGGTGCATCTATAGCAAAATGGATGCTGATACTAAAGTGAGAAGGAAAGAGATTTTGGGTAGTCTTTGTGATCAAAGGGCTAGAATGTTGCAAGATCAATTCAGTGTTAGTGTTAACCATGTTCATGCTCTTGCCATCCTTGTTTCAACTTTTCATTATTACAGAAACCCTTCGGCTATTGACCAGGAATCATTTGCAGAATATACTGCTAGGACTGCGTTTGAAAGGCCATTACTGAGTGGAGTGGCCTATGCACAGAGAGTTGTTAACTATGAAAGAGACAGATTTGAGAAGCAACATGGATGGGTTATAAAGACAATGGAAAGAGAGGCTTCACAGGTTAGGGATGAGTATGCGCCGGTCATATTTGCTCAGGAAACTGTCTCTTACCTTGAGTCTATCGATATGATGTCGGGAGAGGAGGACCGAGAGAACATTTTGAGAGCTAGGGCTACCGGGAAAGCTGTTCTGACTAGCCCTTTTAGGCTGTTGGGTTCACATCATCTTGGTGTGGTTTTAACATTTCCTGTTTACAAATATAAGCTCCCTTCAAACCCAACAACAGAAGAGCTCATTAAAGCGACCGCAGGATATATCGGAGGACCCTTTGACGTCGAGTCTCTTGTGGAGAATTTACTCAGTCAACTTGCTGGTCATCAAGCAATTTTGGTCAATGTATTCGATATAACAAACTCTACTGACCCGCTAATCATGTATGGAAACCAATACGAGGAAGGTGATGTTTCTCTTGTCCACGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATCAAATGATATGTAGGTATCACCAGAAGGCACCGACAAATTGGATAGCGCTTACCACTGCATTCCTATTCTTTGTGATTCTTTTATTAGTAGGTTACATTTTATATGGTGCCGGAAAGCATATTGTCAAAGTAGAGGACGATTTCCACAAAATGGAGGAACTAAAAGTGCAAGCAGAAGCCGCTCATATTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATTAGAACACCTATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTACGCACGGAATTGAATTCAACTCAACGGGATTATGCTCAGACAGCTCAAGCATGTGGGAAGGCTCTCATAGCATTAATAAACGAAGTGCTTGACCGAGCTAAAATTGAAGCCGGAAAATTAGAGCTGGAAGCAGTTCCTTTCGACCTTCGTTCCATACTAGACGATGTCCTCTCTCTTTTCTCAGAGAAATCTAGACACAAAGGTTTAGAGCTGGCAGTGTTTGTTTCTGATAAAGTTCCAGATGTTGTTATGGGAGATCCTGGAAGATTCAGACAAATAGTAACAAATCTTGTTGGCAACTCTGTTAAATTTACTGAGCGAGGACATATATTTGTCAAAGTCCATTTAGCTGAAAAGAGAAAGTCAACAATGAATGGAAACATCGAGACTTTTCTAAATGGAGGATCTGAAGAAATTGTGCATAAATCTGGCAGTTATAATCTCAAAACCCTAAGTGGATGCGAAGCAGCTGATGAACGTAACAACTGGGATAATTTTAAGCATCTAATTGACGACGAAGAATTTTTCTGCGATGCTTCGACTAAAAAAGTTGCTTCTAATGAATTTTATGAGCAAGTCACCTTGATGGTGTGTGTGGAAGACACTGGAATTGGAATTCCTTTCTCGGCTCAAGATAGGATTTTCATGCCTTTTGTGCAGGCTGACAGCTCAACTTCTCGAAACTACGGTGGTACTGGCATTGGCTTGAGTATCAGTAAGTGCTTGGTTGAACTAATGGGTGGTCAGATAAGTTTTATAAGCCGGCCCCAAGTTGGAAGCACCTTTTCGTTTTCAGCGGATTTCGGAATATTTAAGAAGAATTCAATAACCACCGACGTGAAGAAGCTTAATTTCGAAGATCTACCTTCTAGTTTTAGAGGTCTTAAAGCCATTGTGGTTGATGGAAAACCTGTTAGAGCTGCTGTGACTAGGTACCATTTGAAGAGACTAGGGATACAAGCTAAAGTCGCTAATGCCGTCAATAAGGCTGTTTCTCTATGTGGGAAAAATGGTTCTTTGACCACAGGAATATTCCAACCCGATATTATTTTTGTTGAGAAGGATTCGTGGGTTACTGGAGAAGACGGGATCTTTGGTGTCCGGCAACTAGACTGGAAACAGAATGGACATATATTTAAGATGCCTTCCCTGATCCTTCTCACGACGAATATTAGTAACGATGAGTTCGATAAAGCTAAATCGGCAGGTTTTAGCGATACCGTGATCATGAAGCCGCTGAGAGCGAGTATGGTTGGTGCTTGTCTTCAGCAAGTTTTGGGGACAGGCAAGAAAAGACAGCTAGGAAAGGACATGCCTAATGGTTCAACTACAGTTCGAAGCCTTCTTTATGGAAAGAAAATTTTAGTGGTTGATGACAACAGGGTGAACCGTAGGGTGGCTGCTGGCGCGTTGAAGAATTTCGGAGCTGATGCGAAGTGTGCAGATAGTGGCAAAGCTGCTCTTGAAATGCTTCAATTCCCTCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCGGAAATGGACGGGTTCGAAGCAACTAGTCGAATTCGAGAAATGGAGAGGAAGGCAAATGAGGAGAAGAAAAGGGAAGGAAATGACACGAAAAGCGAGTTTCATATACCTATATTGGCGATGACAGCCGATGTAATCCACGCAACATATGAAGCTTGTTTAGAATGTGGTATGGATGGATATGTCTCAAAACCTTTTGAGGAAGAGAATCTTTATCAAGCAGTTGCAAAGTTTTTCAAAGCCAAGCCTATTACCTCAATAGACTCATGA 3015 0.4133 MGLQLKMQTQQHPLDLKLHEQNGNKRKYTFIQAHRAWLLKFLLLWILLMAIIGWCIYSKMDADTKVRRKEILGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQESFAEYTARTAFERPLLSGVAYAQRVVNYERDRFEKQHGWVIKTMEREASQVRDEYAPVIFAQETVSYLESIDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKYKLPSNPTTEELIKATAGYIGGPFDVESLVENLLSQLAGHQAILVNVFDITNSTDPLIMYGNQYEEGDVSLVHESKLDFGDPYRKHQMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGKHIVKVEDDFHKMEELKVQAEAAHIAKSQFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDVVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAEKRKSTMNGNIETFLNGGSEEIVHKSGSYNLKTLSGCEAADERNNWDNFKHLIDDEEFFCDASTKKVASNEFYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQISFISRPQVGSTFSFSADFGIFKKNSITTDVKKLNFEDLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVANAVNKAVSLCGKNGSLTTGIFQPDIIFVEKDSWVTGEDGIFGVRQLDWKQNGHIFKMPSLILLTTNISNDEFDKAKSAGFSDTVIMKPLRASMVGACLQQVLGTGKKRQLGKDMPNGSTTVRSLLYGKKILVVDDNRVNRRVAAGALKNFGADAKCADSGKAALEMLQFPHNFDACFMDIQMPEMDGFEATSRIREMERKANEEKKREGNDTKSEFHIPILAMTADVIHATYEACLECGMDGYVSKPFEEENLYQAVAKFFKAKPITSIDS 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00204 1004 CDD HATPase_EvgS-ArcB-TorS-like 499 677 - -
Car06g00204 1004 SMART HKATPase_4 494 679 IPR003594 -
Car06g00204 1004 PANTHER HISTIDINE KINASE 4 23 997 - -
Car06g00204 1004 CDD REC_hyHK_CKI1_RcsC-like 863 990 - -
Car06g00204 1004 ProSiteProfiles CHASE domain profile. 109 321 IPR006189 -
Car06g00204 1004 Gene3D - 856 1000 - -
Car06g00204 1004 Gene3D - 699 839 - -
Car06g00204 1004 SMART CHASE_2 109 294 IPR006189 -
Car06g00204 1004 Gene3D - 60 112 - -
Car06g00204 1004 Gene3D CHASE domain 113 328 IPR042240 -
Car06g00204 1004 Pfam CHASE domain 112 292 IPR006189 -
Car06g00204 1004 PANTHER TWO-COMPONENT HISTIDINE KINASE 23 997 - -
Car06g00204 1004 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 448 IPR036097 GO:0000155|GO:0007165
Car06g00204 1004 PRINTS Bacterial sensor protein C-terminal signature 604 618 IPR004358 GO:0016310|GO:0016772
Car06g00204 1004 PRINTS Bacterial sensor protein C-terminal signature 622 632 IPR004358 GO:0016310|GO:0016772
Car06g00204 1004 PRINTS Bacterial sensor protein C-terminal signature 639 657 IPR004358 GO:0016310|GO:0016772
Car06g00204 1004 PRINTS Bacterial sensor protein C-terminal signature 663 676 IPR004358 GO:0016310|GO:0016772
Car06g00204 1004 Gene3D - 356 445 - -
Car06g00204 1004 SUPERFAMILY CheY-like 860 994 IPR011006 -
Car06g00204 1004 ProSiteProfiles Histidine kinase domain profile. 389 679 IPR005467 -
Car06g00204 1004 Pfam His Kinase A (phospho-acceptor) domain 382 447 IPR003661 GO:0000155|GO:0007165
Car06g00204 1004 SUPERFAMILY CheY-like 701 836 IPR011006 -
Car06g00204 1004 Gene3D - 446 682 IPR036890 -
Car06g00204 1004 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 436 673 IPR036890 -
Car06g00204 1004 SMART HisKA_10 382 447 IPR003661 GO:0000155|GO:0007165
Car06g00204 1004 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 494 677 IPR003594 -
Car06g00204 1004 CDD HisKA 382 443 IPR003661 GO:0000155|GO:0007165
Car06g00204 1004 Coils Coil 432 452 - -
Car06g00204 1004 Pfam Response regulator receiver domain 863 990 IPR001789 GO:0000160
Car06g00204 1004 SMART REC_2 861 990 IPR001789 GO:0000160
Car06g00204 1004 ProSiteProfiles Response regulatory domain profile. 862 994 IPR001789 GO:0000160
Car06g00204 1004 ProSiteProfiles Response regulatory domain profile. 705 835 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00204 Car-Chr6 2224505 2231460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00204 23 1000 Histidine Kinase Gene Family AT2G01830 70.445 0.0 1382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car06g00204 HATPase_c 8.2e-31 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00204 06 2224505 2231460 Car06g00204 06 2224505 2231460 ECH