Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00033 ATGGTTTTGTCATGGACAAAAAGAAACATGTTCCGCCGTACCCACAAGGCAAAACAACAACTTCCCGGCGGCGATTTACCGGTGGAGGAGATTACAATCCCGACCCATTTCCGGTGTCCGGTGAGTCTAGACTTAATGAAAGATCCAGTTACTTTACCGACCGGAATCACCTACGACAGAACAAGCATCGAGAAATGGATCGAATCTGGTAACAAAACTTGCCCAGTTACAAATCAGAATCTCACAACCTTTGAAATCACACCCAACCACACCATTCGTAAAATGATTCAGAATTGGTGCGTTGAAAACAGTTCTTACGGGATTGAAAGAATCCCAACTCCTCGTATACCAATTTCGAGCTACGAGGTTTCCGAGGTTTGTACGAGGTTGTTGTCGGCTTCACAGCGTGGTGATGAGAAAAAGTGTTTGGAGTTTGTCGGAAAGATTAAGGTTTGGTGGAGAGAGAGTGAGAGGAATAAAAGGTGTATAGTTGGAAATGGAGCTTGTTCTGTTTTTGCAACGGTTTTTGATTCTTTTTCAAGTGTTTCTATTGAGAAACATGTGGTTATTTTGGAGGAGATTTTGGAGATTATGATGATGATAAATAAAACCCATTTTGGTGAAACAAAATTGTGTTTTGGAAATCAAGCTTCTTTACGTTGTTTGGTTTGGTTTCTAGATGGTAAAGATTTAGGTGCAAGACAAAATTCTGTTTTTTTGCTTGAAGAAGTTTTGTGTGTTGATGAGTTAGCAACAATTGAAGGTGTTGTTGAAGGTTTAGTTAAGATTATTAAGGAACCAATTGGGTTAAGTGCTACAAAAGCATGTTTATCAACAATATTCAACTTGGTTTCATCGTGTAAAAACAGAGTTGAAATTAGTGAGAAGTTAGTTGAATTGGGTTTGGTTTCATTTTTGCTTGAAACAATTGTTGATGGAGAAAGAGGGGTAATTGAGAAAGCACTTGGTGTTTTGAATTGTTTATGTGATTGCAAAAAAGGAAAAGAGGTTGTTAAAATGAATGCTTTAACTTTGCCTCTTGTGGTTAAGAAAATTTTGAGGGTGTCACCTTTGGCTTCTAGTTTTGCTGTTGGTATTGTTAGAAAAATGTGTGAGAAGAAAGAAGAGGGGATTTTGATTGAGGCACTTCAACTTGGTGCTTTTCAGAAATTGTTGGTTATGTTGCAAGTTGGCTGTGAGGAAAATACAAAGGAGAATACTACTGAATTGTTGAAATTGTTGAATGGTTATAAAAGCAAAGCTGAGTGTGTTGATTCTTCATTGGATTTCAAGTATCTTAAGAACTAA 1308 0.3746 MVLSWTKRNMFRRTHKAKQQLPGGDLPVEEITIPTHFRCPVSLDLMKDPVTLPTGITYDRTSIEKWIESGNKTCPVTNQNLTTFEITPNHTIRKMIQNWCVENSSYGIERIPTPRIPISSYEVSEVCTRLLSASQRGDEKKCLEFVGKIKVWWRESERNKRCIVGNGACSVFATVFDSFSSVSIEKHVVILEEILEIMMMINKTHFGETKLCFGNQASLRCLVWFLDGKDLGARQNSVFLLEEVLCVDELATIEGVVEGLVKIIKEPIGLSATKACLSTIFNLVSSCKNRVEISEKLVELGLVSFLLETIVDGERGVIEKALGVLNCLCDCKKGKEVVKMNALTLPLVVKKILRVSPLASSFAVGIVRKMCEKKEEGILIEALQLGAFQKLLVMLQVGCEENTKENTTELLKLLNGYKSKAECVDSSLDFKYLKN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00033 435 Gene3D - 134 419 IPR011989 -
Car06g00033 435 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
Car06g00033 435 SUPERFAMILY RING/U-box 25 109 - -
Car06g00033 435 SUPERFAMILY ARM repeat 126 411 IPR016024 -
Car06g00033 435 PANTHER WDSAM1 PROTEIN 16 435 IPR045185 GO:0061630
Car06g00033 435 Pfam U-box domain 33 104 IPR003613 GO:0004842|GO:0016567
Car06g00033 435 CDD RING-Ubox_PUB 37 79 IPR045210 -
Car06g00033 435 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 16 435 - -
Car06g00033 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 110 IPR013083 -
Car06g00033 435 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00033 Car-Chr6 424124 425832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00033 27 434 U-box Gene Family AT5G37490 46.988 3.90e-115 342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00033 06 424124 425832 Car06g00033 06 424124 425832 ECH
Car06g00033 06 424124 425832 Car02g01521 02 42546779 42547336 PCT