Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02060 ATGGAGTGGCAAGATTTCTTCTTAGCAGCAACAACAACCTTAGGCTTCATCACTATATGCAAATCTCTTATCCATTTTCTAAACTATATATGGGTCATGTTCTTAAGACCATCAAAAAATCTCAAACAATATGGTTCATGGGTTATAATCACTGGCTCCACTGATGGAATAGGAAAAGCCATGGCTTTTGAGTTTGCATCTAAGGGACTCAACATTCTCTTGGTTGGTAGAAACCCTCTTAAACTAGAGTCAACATCAAAGGAGATAATAGACAAACATTTTGGAAATGTTGAGGTAAAATGTGTTGTTTTAGACTTGCGAAAAAATTGTGGAGAGGAAATAATGAAAAAGTTAGAAGATGCAATATATGGTTTAGATGTGGGGATTTTGGTTAATTGTGCTGGAATGGCTTACCCTTATGCAAGATATTTTCATGAGGTTGATTTGGATTTGATGAATTCAATTATTAAAGTGAATGTGGAAGGATTAACTTGGGTTACAAAAGCTGTGATTCCTAGTATGATTAAGAAGAAAAAGGGTGCTATTATTAACATTGGTTCTGGTTCTAATGCTGTGCTTCCTTCATATCCTCTTGTCACACTTTATGCAGCTTCAAAAGCGTATCTTACAATGTTCTCAGCATCCATCAATTTGGAATACAAGAAGCAAGGAATTGACATCCAGTGTCAGGTAATTCTCTTTTGCTTCTCTCATGTTTCATGGAAGGtaaattga 735 0.3537 MEWQDFFLAATTTLGFITICKSLIHFLNYIWVMFLRPSKNLKQYGSWVIITGSTDGIGKAMAFEFASKGLNILLVGRNPLKLESTSKEIIDKHFGNVEVKCVVLDLRKNCGEEIMKKLEDAIYGLDVGILVNCAGMAYPYARYFHEVDLDLMNSIIKVNVEGLTWVTKAVIPSMIKKKKGAIINIGSGSNAVLPSYPLVTLYAASKAYLTMFSASINLEYKKQGIDIQCQVILFCFSHVSWKVN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02060 244 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 229 IPR036291 -
Car05g02060 244 Gene3D - 40 237 - -
Car05g02060 244 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 221 IPR002347 -
Car05g02060 244 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Car05g02060 244 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 188 IPR002347 -
Car05g02060 244 CDD 17beta-HSD1_like_SDR_c 45 234 - -
Car05g02060 244 PANTHER RH59310P 2 235 - -
Car05g02060 244 Pfam short chain dehydrogenase 47 229 IPR002347 -
Car05g02060 244 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Car05g02060 244 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Car05g02060 244 PRINTS Glucose/ribitol dehydrogenase family signature 174 190 IPR002347 -
Car05g02060 244 PRINTS Glucose/ribitol dehydrogenase family signature 202 221 IPR002347 -
Car05g02060 244 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 2 235 - -
Car05g02060 244 PIRSF 11-beta-HSD1 2 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02060 Car-Chr5 65848910 65850106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02060 14 240 Lipid Metabolism Gene Families AT1G67730 53.304 4.79e-86 256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02060 05 65848910 65850106 Car05g02060 05 65848910 65850106 ECH
Car06g00899 06 8772393 8775874 Car05g02060 05 65848910 65850106 PCT