Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02855 ATGATGAGAAACACTTTGAAAAGCTATCATCACTTTCACTTTCACTACAACCCAACAACAATTTTCCATGGAAAAACTTTCCTCACATCACTCTTTCACACCCTTCTCAATCCAAACCAAAACCAAGTACATGAATGGAAATCGAACACTCAACAACAACAACAAAACCCCGAGTTTCAGATTTCTCATCCTTGGTCCGAATGGGTAGATTTGATGGAATGTTTGATCAAAAAGGGTCACTTCAATGCAGAGGGCAACCCATTTCTGAATCCTCATTTGGGTTCAAAAGAATGTAATCTTATTAGAACTGCTTGCCTCAATTTTGGTAGAGACCATTCTCATCTTTTAAGGTTTTTGTCTCGAAAAGATATAGGAGTTATTGTAACGTTTGGATGTCCAAGCTTAGATAGGAAAGTGGTCAACTCAGGAAAGCGTCTGAGAGCGCATGTCGGCATGGATGAGGGAAATGTGTGCAGCTCGTGCAATTTAAGGGGGAACTGTGAAAGGGCATTCGTGAAAGCACGTGAAGACGAAGGTGGAAGAACGGTGGATGTTATGCGTATTATTATGACTTATGGGCTTGACCCAATTATTGGTTCAGTAGAGAACAAACCGTCTATAAATAAAATGGTAAAAGAATCTGTGAGAAGACTGCTAAAAAAGATAGTAGAGTGCAGTACTGAAGACAAAAATCATAACTTTCCAGACACCACAAAGGTTGATGTCCAAGAAGTTCATCCCAATCCACAAGTTAAGGGCAAAAAAGGCGTTCCGATGAAGCAAGGCGACTGGATTTGCCCCAAATGTGATTTCCACAACTTCGCCAGAAATATCAAGTGCTTGCACTGTGACAGTTTCTGTGAGGAGAAAATTAAGCAATTGCAGGAGGACAACAATCATTTGCCTTTGAAGAAGGGAGATTGGATATGCAACAAATGCAACTTCCTCAATTTTGCAAGGAATACAAGATGTTTGCAATGCAAAGAGGGGCCTTCAAACCGTCACATTAATCCAGGGGAATGGGAATGCGATTCGTGTAACTACATAAATTTCAGAAGAAACATGGTTTGCCTGAAATGTGATCATAGAAGACCTAAGACGTCAAATGCTTCAAACTCTTCCCTTCAACCTCATGGAGAATATAAAAACCACCATGAGAATAGCAAACCAACTTTTGCAGGATATCGCTTTGATAGTAACAAAGAATTGCCAATGGCATCCGAAAGAAAGAGCAGGAACAGAGATTCACATATATGGAGATTTGTAGAAGATGGAATTGAAAATCACAAGTACTTAGAGAACTCAAATGAAACTTCGGAAATTTTAGATTTTCCTATTGCTGGAGGTAAGACTGGTATGCCTAAAGCACAAAGAGGAGAAGCTTGTAAGAACGAGCTGCCAAATCAGTGCAGAAAGCATTCATGGCAAAGTGATACCGATGACGAGTTTAGTTCTTCTGATAACCTGAGTTCCGACGATGAAGAGATGGCCGAATGGTTTGGAAAGGGTAAGAATGCAAAGTAG 1524 0.4016 MMRNTLKSYHHFHFHYNPTTIFHGKTFLTSLFHTLLNPNQNQVHEWKSNTQQQQQNPEFQISHPWSEWVDLMECLIKKGHFNAEGNPFLNPHLGSKECNLIRTACLNFGRDHSHLLRFLSRKDIGVIVTFGCPSLDRKVVNSGKRLRAHVGMDEGNVCSSCNLRGNCERAFVKAREDEGGRTVDVMRIIMTYGLDPIIGSVENKPSINKMVKESVRRLLKKIVECSTEDKNHNFPDTTKVDVQEVHPNPQVKGKKGVPMKQGDWICPKCDFHNFARNIKCLHCDSFCEEKIKQLQEDNNHLPLKKGDWICNKCNFLNFARNTRCLQCKEGPSNRHINPGEWECDSCNYINFRRNMVCLKCDHRRPKTSNASNSSLQPHGEYKNHHENSKPTFAGYRFDSNKELPMASERKSRNRDSHIWRFVEDGIENHKYLENSNETSEILDFPIAGGKTGMPKAQRGEACKNELPNQCRKHSWQSDTDDEFSSSDNLSSDDEEMAEWFGKGKNAK 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02855 507 MobiDBLite consensus disorder prediction 364 396 - -
Car04g02855 507 MobiDBLite consensus disorder prediction 471 507 - -
Car04g02855 507 ProSitePatterns Zinc finger RanBP2-type signature. 341 360 IPR001876 -
Car04g02855 507 Pfam Zn-finger in Ran binding protein and others 260 285 IPR001876 -
Car04g02855 507 Pfam Zn-finger in Ran binding protein and others 339 361 IPR001876 -
Car04g02855 507 Pfam Zn-finger in Ran binding protein and others 304 328 IPR001876 -
Car04g02855 507 SUPERFAMILY Ran binding protein zinc finger-like 298 329 IPR036443 -
Car04g02855 507 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 281 505 - -
Car04g02855 507 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 42 283 - -
Car04g02855 507 ProSiteProfiles Zinc finger RanBP2 type profile. 337 366 IPR001876 -
Car04g02855 507 ProSitePatterns Zinc finger RanBP2-type signature. 264 283 IPR001876 -
Car04g02855 507 ProSitePatterns Zinc finger RanBP2-type signature. 308 327 IPR001876 -
Car04g02855 507 Gene3D - 252 289 - -
Car04g02855 507 Gene3D - 295 331 - -
Car04g02855 507 Gene3D - 332 367 - -
Car04g02855 507 PANTHER ZINC FINGER PROTEIN 281 505 - -
Car04g02855 507 PANTHER ZINC FINGER PROTEIN 42 283 - -
Car04g02855 507 SUPERFAMILY Ran binding protein zinc finger-like 330 367 IPR036443 -
Car04g02855 507 SMART zf_4 339 363 IPR001876 -
Car04g02855 507 SMART zf_4 306 330 IPR001876 -
Car04g02855 507 SMART zf_4 262 286 IPR001876 -
Car04g02855 507 SUPERFAMILY Ran binding protein zinc finger-like 253 286 IPR036443 -
Car04g02855 507 ProSiteProfiles Zinc finger RanBP2 type profile. 304 333 IPR001876 -
Car04g02855 507 ProSiteProfiles Zinc finger RanBP2 type profile. 260 289 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02855 Car-Chr4 55366991 55370882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02855 59 382 EF-hand Containing Proteins AT1G55040 37.069 4.52e-63 218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02855 04 55366991 55370882 Car04g02855 04 55366991 55370882 ECH