Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02839 ATGCCTGCGTCGTTGCAGAAAATGGCGCACTCGAGTTCGAAGAGTGATTCTGCTGCTGCTCAGTTCCCGGCCGGTTTAAGAGTTCTCGTCGTTGATGATGACGTCACTACCTTGAAGATTATCGAGCGAATGTCACTTCGCTGCCATTACCGCGTCACTACATGTTCTGAGGCTACAGTCGCTTTGAACATTCTGCGGGAGCGGAAAGGCTGTTTTGATGTTGTGCTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAACTCCTCGAACATGTTGGGTTGGAAATGGACCTTCCTGTTATTATGATGTCTGTTGATGATAGGACGAGTACTGTCATGAAGGGAATTAGACACGGAGCTTGTGATTATTTTATTAAGCCCGTACGAGAGGAAGAACTAAGGAATATATGGCAGCATGTTGCTAGGAAATTTTTGAATGAAAGTAAGGAACATGATAATTCTGGCTACATAGAAGATAATGATCGCAATAAACAGGGGAATGATGATAATGATAACACTTCTTCTGTTGCCGGTGCAACAAAAGGAATAATTAAAGAACCAAAAAAGAGGAGCAATATAAAAGATGAAGAAGATGTAGAATTGGAGAATGATGATCCATCTACTTCTAAGAAGCCTCGTGTGGTATGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAATCAACTAGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTCCCTGGTTTGACGAGAGAAAATGTTGCAAGCCATTTGCAGAAATTTAGACTTTATTTGAAGCGATTAAGTGGAGTGGCACAGCAACAGAATGGGATGCTAAACACAGTTCCTGGGACTATAGAATCCAAGCTGGCTGCTACTGGAAGATATGACATACAGACATTGGCTGCTTCTGGCCATGTTTCCCCTGAAACACTTGCAGCTCTTCATGCTGAGTTCTTAGGTCGCCCAGTAACTAACATAATGTCTACAATTGATCATACTGCACTAATGCAGGCATCTGTACAAGGGCCAAAACATTCTCGTGCCGATGATCATGCTGTAGCATATGGTCAGCCTCTTGTAAAATGTGCTTCCAACATTGTCGGTAATTTCCCTCAACCCATATTAACTGTAGATGATACATCGTCCAGATATGGAGCATGGCCGCCAACTAATACACTCGGTTCAGTCTCAAGTGGAAGAAGGTTAGGCGTTCAGAATAATAACATGCATATTGATATATTgcagcaccaacaaaagcaccagcatcagcaaaaacaacagcagTCGCTGATACATGATCAAAATCGATCAATCAATGTTCAACCATCTTGCCTGGTGGTTGCTGCTCAATCTTCTGACACTTTCCAGGCAGTAAATAGTGTTACTTCAGTCATTAAAGATAGCAGTTTTGGCAGAAATGCCATCAATGGTTATAGTCATTCATCACAAAAATTGAATAATTCATCGAGTACGTCACAATATCCTGGTGGAGACACCAAAGCTACCTCCATTTCTCCTCAAGCATCCTGTTTTTCAGTAGGCTCCAGCAACAGTAATATTCAGCAGATTCAAAATTCAACTTCAACATTTGGTGCTATGAGACCATTGCCTAGCCTTCTACCCGTGACTTTTAGACAAGTTCCAAATGATATTAACTCCAGCGATTCACTTGATCAAGTATGTCTTAGGAATCTTGGATTTGTCGGAAAAGGTACCTGCATACCAAGTTTTGAAAATAAAATTGAATCATCTGCAAGTGATTTTAGTCAAATGAAAGTATTCATGGCTAGCAATGGTAACACAGTGAAGGAGGAGCCAAATTTGATCAGATATCCAAATGTGAGCCACCTAGTCCTACAGAATTATCCGTCTCATGATCATTCAAGTGCATTCACTTAA 1908 0.4025 MPASLQKMAHSSSKSDSAAAQFPAGLRVLVVDDDVTTLKIIERMSLRCHYRVTTCSEATVALNILRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSVDDRTSTVMKGIRHGACDYFIKPVREEELRNIWQHVARKFLNESKEHDNSGYIEDNDRNKQGNDDNDNTSSVAGATKGIIKEPKKRSNIKDEEDVELENDDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNGMLNTVPGTIESKLAATGRYDIQTLAASGHVSPETLAALHAEFLGRPVTNIMSTIDHTALMQASVQGPKHSRADDHAVAYGQPLVKCASNIVGNFPQPILTVDDTSSRYGAWPPTNTLGSVSSGRRLGVQNNNMHIDILQHQQKHQHQQKQQQSLIHDQNRSINVQPSCLVVAAQSSDTFQAVNSVTSVIKDSSFGRNAINGYSHSSQKLNNSSSTSQYPGGDTKATSISPQASCFSVGSSNSNIQQIQNSTSTFGAMRPLPSLLPVTFRQVPNDINSSDSLDQVCLRNLGFVGKGTCIPSFENKIESSASDFSQMKVFMASNGNTVKEEPNLIRYPNVSHLVLQNYPSHDHSSAFT 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02839 635 Gene3D - 26 198 - -
Car04g02839 635 ProSiteProfiles Response regulatory domain profile. 27 142 IPR001789 GO:0000160
Car04g02839 635 MobiDBLite consensus disorder prediction 481 504 - -
Car04g02839 635 PIRSF RR_ARR_type-B 6 629 IPR017053 GO:0003677|GO:0003700|GO:0009736
Car04g02839 635 CDD REC_typeB_ARR-like 28 142 - -
Car04g02839 635 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 21 463 - -
Car04g02839 635 SMART REC_2 26 138 IPR001789 GO:0000160
Car04g02839 635 SUPERFAMILY CheY-like 25 148 IPR011006 -
Car04g02839 635 Pfam Response regulator receiver domain 28 137 IPR001789 GO:0000160
Car04g02839 635 MobiDBLite consensus disorder prediction 152 169 - -
Car04g02839 635 Pfam Myb-like DNA-binding domain 214 262 IPR001005 -
Car04g02839 635 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Car04g02839 635 MobiDBLite consensus disorder prediction 152 211 - -
Car04g02839 635 Gene3D - 208 271 - -
Car04g02839 635 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 463 IPR045279 GO:0009736
Car04g02839 635 MobiDBLite consensus disorder prediction 184 198 - -
Car04g02839 635 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Car04g02839 635 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 268 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02839 Car-Chr4 55167281 55173712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02839 60 326 Response Regulator Gene Family AT3G16857 53.169 4.20e-91 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Car04g02839 Response_reg 4e-20 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02839 04 55167281 55173712 Car04g02839 04 55167281 55173712 ECH