Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01980 ATGACAAACAAAATGGAAAAAATGGCTTCCATTGATGCTCAGCTTAGGCAATTAGCACCAGCAAAAGTGAGTGAAGATGATAAACTTATTGAGTATGATGCTTTGTTGTTGGATCGGTTTCTTGATATTCTTCAGGATTTACATGGAGAGGATCTCAAGGAAACTGTTCAAGAAGTGTATGAGCTTTCTGCCGAGTATGAAAGAAACTATGATCCTAAGAAACTTGAAGAACTTGGAAACTTGATAACAAGTTTAGATGCAGGAGACTCAATTGTTGTTGCAAAGTCCTTTTCACACATGCTTAACTTGGCAAACTTAGCTGAAGAGGTTCAGATTGCTCACCGCCGAAGGAACAAGTTGAAGAAAGGTGATTTTGTGGACGAGAACAATGCAACTACAGAATCGGACATCGAAGAAACTCTCAAGAAACTTGTATTTAAAATGAAGAAAACTCCTCAGGAAGTTTTTGATGCATTGAAGAACCAGACGGTTGATCTGGTTCTTACTGCTCATCCTACTCAGTCCGTTAGGAGATCTTTGCTTCAAAAGCATGCAAGGGTAAGGAACTGTTTATCTCAATTGTATGCAAAAGATATCACTCCTGATGATAAACAGGAGCTTGATGAAGCTCTTCAGAGAGAGGTGATATTTGCAGCTGATACGAGTCATTTGGTATTTCTAATAATTTTCTTCTACTTCCATGAAACAATTTGGAAGGGTGTTCCTATATTTCTGCGCCGTGTTGATACAGCGTTGAAGAACATAGGGATTAACGAACGTGTTCCCTATAACGCTCCTCTTATTCAGTTTTCTTCTTGGATGGGGGGTGATCGTGATGGTAATCCGAGAGTTACTCCAGAAGTGACAAGGGATGTTTGCCTACTAGCTAGAATGATGGCTGCTAATTTGTATTATTCACAGATTGAAGATCTTATGTTTGAACTTTCTATGTGGCGTTGCAATGATGAGCTACGTGTTCGTGCAGAAGCACTTCACAGTCATTCCAAGAAAGACGAAGTTGCAAAACATTATATAGAATTTTGGAAAAAAATTCCTTTAAATGAACCATACCGTGTTATACTTGGTGATGTAAGGGATAAGCTCTACCGTACTCGTGAGCGTTCTCGTTATCTGCTAGCTCATGGATATTCTGATATTCCAGAAGAAGCCACTTTCACCAATGTTGATGAGTTCCTGGAACCTCTTGAACTCTGCTATAGATCACTCTGCGCTTGTGGTGATCGTGCAATAGCCGATGGAAGCCTTCTTGATTTCTTGAGGCAGGTTTCAACTTTTGGACTGTCACTGGTAAGGCTTGATATAAGGCAAGAGTCAGATCGTCACACTGATGTTATGGATGCGATTACCAAACATTTGGGAATTGGATCCTACCAAGAATGGTCTGAAGAGAAAAGACAAGAATGGCTTTTGTCTGAGTTGAGTGGGAAAAGGCCATTGTTTGGTCCCGACCTTCCTCAAACCGAAGAAATTCAAGATGTCTTGGAGACATTTCGTGTCATAGCAGAATTACCATCAGACAACTTTGGAGCCTATATCATATCTATGGCAACTGCACCATCTGATGTGCTTGCGGTCGAACTTCTTCAACGCGAATGCCACATCAAGAATCCGTTAAGAGTTGTACCGTTGTTTGAGAAGCTTGATGATCTTGAGGCTGCTCCTGCTGCGTTGGCTCGGCTGTTCTCAGTAGAATGGTACAGAAACCGGATCGATGGTAAGCAAGAAGTCATGATTGGATATTCGGATTCAGGAAAAGACGCCGGAAGGTTTTCTGCAGCATGGCAGCTATATAAGGCTCAAGAGGAACTCAGAAATGTTGCTCAGAAATTCGGTATTAAGCTAACCATGTTCCACGGTCGTGGTGGAACAGTTGGAAGAGGAGGTGGACCTACTCATCTTGCTATCTTGTCTCAACCTCCAGACACGATTCATGGATCGCTTCGTGTGACGGTTCAAGGTGAAGTTATTGAACAGTCATTTGGAGAGCAGCACTTGTGCTTTAGAACGCTGCAACGTTTCACTGCTGCCACTCTAGAACATGGAATGCGTCCCCCAAGTTCTCCAAAACCAGAATGGCGTGCCTTGATGGATCAAATGGCTGTCATTGCTACCGAAGAATACCGTTCAATAGTGTTCAAGGAGCCGCGTTTTGTTGAGTATTTCCGCCTGGCTACACCAGAGATGGAGTATGGAAGGATGAACATTGGAAGCCGACCGGCAAAGAGAAGGCCTAGTGGAGGAATCGAAACACTGCGTGCGATACCGTGGATCTTTGCATGGACACAAACAAGGTTTCATCTTCCAGTATGGCTAGGATTTGGAGCAGCATTTAAACAAGTTATTGAGAAGGATGTTAAGAATCTTCATATGCTGCAAGAGATGTACAATAAATGGCCTTTCTTTAGGGTCACAATTGATTTAGTTGAAATGGTGTTTGCCAAAGGAGACCCTGGAATTGCAGCTTTGAATGATAGGCTCCTAGTTTCACAGGATCTGTGGCCATTTGGTGAGCAGTTGAGGAACAAATATGAAGAAACTAAGAAACTCCTACTTCAGGTGGCTGCACACAAGGAAGTTCTTGAAGGAGACCCTTACTTGAAGCAAAGACTCAGGCTTCGTGATTCGTACATCACAACTCTCAACGTTTTCCAAGCTTACACATTGAAAAGGATCCGCGATCCAAACTACAGCGTGACGGTGCGCCCTCACATTTCAAGAGAGTCCGTGGAAACAAGTAAACCAGCCGATGAACTTGTAACACTGAATCCAACAAGTGAATTTGGTCCTGGATTGGAAGACACACTCATTCTTACCATGAAGGGTATTGCTGCTGGAATGCAGAACACTGGTTAA 2874 0.4273 MTNKMEKMASIDAQLRQLAPAKVSEDDKLIEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYERNYDPKKLEELGNLITSLDAGDSIVVAKSFSHMLNLANLAEEVQIAHRRRNKLKKGDFVDENNATTESDIEETLKKLVFKMKKTPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHARVRNCLSQLYAKDITPDDKQELDEALQREVIFAADTSHLVFLIIFFYFHETIWKGVPIFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVRAEALHSHSKKDEVAKHYIEFWKKIPLNEPYRVILGDVRDKLYRTRERSRYLLAHGYSDIPEEATFTNVDEFLEPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLGIGSYQEWSEEKRQEWLLSELSGKRPLFGPDLPQTEEIQDVLETFRVIAELPSDNFGAYIISMATAPSDVLAVELLQRECHIKNPLRVVPLFEKLDDLEAAPAALARLFSVEWYRNRIDGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELRNVAQKFGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEQHLCFRTLQRFTAATLEHGMRPPSSPKPEWRALMDQMAVIATEEYRSIVFKEPRFVEYFRLATPEMEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKQVIEKDVKNLHMLQEMYNKWPFFRVTIDLVEMVFAKGDPGIAALNDRLLVSQDLWPFGEQLRNKYEETKKLLLQVAAHKEVLEGDPYLKQRLRLRDSYITTLNVFQAYTLKRIRDPNYSVTVRPHISRESVETSKPADELVTLNPTSEFGPGLEDTLILTMKGIAAGMQNTG 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01980 957 PRINTS Phosphoenolpyruvate carboxylase signature 432 452 IPR021135 GO:0006099|GO:0008964|GO:0015977
Car01g01980 957 PRINTS Phosphoenolpyruvate carboxylase signature 623 652 IPR021135 GO:0006099|GO:0008964|GO:0015977
Car01g01980 957 PRINTS Phosphoenolpyruvate carboxylase signature 270 285 IPR021135 GO:0006099|GO:0008964|GO:0015977
Car01g01980 957 PRINTS Phosphoenolpyruvate carboxylase signature 581 601 IPR021135 GO:0006099|GO:0008964|GO:0015977
Car01g01980 957 PRINTS Phosphoenolpyruvate carboxylase signature 166 179 IPR021135 GO:0006099|GO:0008964|GO:0015977
Car01g01980 957 PRINTS Phosphoenolpyruvate carboxylase signature 755 781 IPR021135 GO:0006099|GO:0008964|GO:0015977
Car01g01980 957 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 583 595 IPR033129 -
Car01g01980 957 Hamap Phosphoenolpyruvate carboxylase [ppc]. 22 957 IPR022805 GO:0006099|GO:0008964|GO:0015977
Car01g01980 957 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 957 IPR021135 GO:0006099|GO:0008964|GO:0015977
Car01g01980 957 Pfam Phosphoenolpyruvate carboxylase 34 957 IPR021135 GO:0006099|GO:0008964|GO:0015977
Car01g01980 957 Gene3D Phosphoenolpyruvate/pyruvate domain 298 435 - -
Car01g01980 957 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 957 - -
Car01g01980 957 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 32 957 IPR015813 GO:0003824
Car01g01980 957 Coils Coil 103 123 - -
Car01g01980 957 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 167 178 IPR018129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01980 Car-Chr1 44911741 44916930 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01980 01 44911741 44916930 Car01g01980 01 44911741 44916930 ECH
Car01g01980 01 44911741 44916930 Car07g02232 07 32567495 32572952 PCT