Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00559 ATGCACCAGATGTTTTCTAGGAGCAGCTCTGGATGGTTCAATGGAATCCTCAAGAACCACTTTAACGTCCTCAAAATCCCCTCACATGTTTCTCTATTCTACAGCGCCCTTTCCAAGTCCCATGCTCCTGCTTCAAAGCTAGATTTCATCTTAAACGAGGTTGAAGAGCTTCAATCTTCAAAGCTTACCAATACGTTTTCTCCACCAACCTCAGATTCTGATGAATTTTCGGATATGGATGTTCCTAACAAGCCCGAACACTCCGCAGTGAAGATTTCACATCCTTGGCCTGAATGGGTGGATTTAATGGAGTGCTTGCTGAAAAGGGGATACTTTGATGCAGAAGGAAACCCATTTCAAAATGATCAATTGGGTGCTAAGGAGTCCAAGATCATCAGGACCGCGTGTCTGAATTTCGGTCGTGATCAGTATAATCTTTTAGGGTTCTTGTCTCGGAAAGATATACAAGTTGCTGTACAATTTGGATGCCCGAGCTTAGATAGGAAAGTTATCAACTCAGGCAAGCGTTTGAGAGCTTATGTAGGCATCAATGAGGGAAATGTCTGCAGCTCCTGTAATTTGAGGGGAGACTGTGACAGGGCATTCGTGAAAGCACGAGAAGATGAAGGTGGAAGGACAGTGGATGTTATGCGTATTATCTTGACATATGGGCTTGATCCTATCATTGATTCCGTGGAAAACAAGCCATGTCTTAGTAAAATGGTTAAAGAATCAGTGAGAAGACTACTGAAAGAATTAGTAAAGGCCAGTATTGAAGTGGACAATTATAATAACCCCGACGCCCAAAAGGTTGAAATTAGACAAGCGAATACCAATCCGGAAGATGagagcaaaataaaaattccaatGAAGCAAGGCGACTGGCTTTGCCCCAAATGCAACTTCCACAACTTTGCACGAAACATAAAGTGCTTGCGCTGTAATGAGTTATTCCAGGAAAGAATAAAGCAATTGCAGCAGGATCAAGACCATCTTCCTTTGAAGAAAGGAGACTGGATATGTAACAAATGTAACTTCCTAAATTTTGCCAAAAATACAAGATGTTTTCAGTGCCAAGAGAATCCTCCAAAGCGGCAGCTTAATCCAGGGGAGTGGGAATGTCCCTCGTGCAACTACATCAATTTCAGGAGAAATATGGTCTGTCTGAAATGTGATCACAGACGGCCGAAGGCATCAAACGTTTCagattcttcttttcaatCTCAACATGAAGATAAAGACCACCATGAGAATTGCAAATTGAATCTCTTGAGAAGCAATGGTAATAGTAATTACCAGTCATCTATGGTGATGTACAGAAACCGGAGTAGAGGTTCAAATACATGGAGATTTGTAGACAATGTGAATGATGACCAAAATCGTTCAAATTCATGGAATGATAATTcccaatttataaattttcccATTGTTGGAGGTATGACTGAATTCTCTGAGAATGcccaaaaaagagaagaatggaaaaaagaTATGTTAAGAAGGAGCAAAGGTCTTGTGGGAACTAGTGAAAGTGATGATGAGTTCTGGTCTGATGACAACGAGAATAGGAAAAGAATTTTTGATCTTACTGATGATGAAGAGATAGACGAATGGTTTGGAAATGGTAAGAATGGAAGAAATAAGATACCCGAGAGCAAGTA 1658 0.3908 MHQMFSRSSSGWFNGILKNHFNVLKIPSHVSLFYSALSKSHAPASKLDFILNEVEELQSSKLTNTFSPPTSDSDEFSDMDVPNKPEHSAVKISHPWPEWVDLMECLLKRGYFDAEGNPFQNDQLGAKESKIIRTACLNFGRDQYNLLGFLSRKDIQVAVQFGCPSLDRKVINSGKRLRAYVGINEGNVCSSCNLRGDCDRAFVKAREDEGGRTVDVMRIILTYGLDPIIDSVENKPCLSKMVKESVRRLLKELVKASIEVDNYNNPDAQKVEIRQANTNPEDESKIKIPMKQGDWLCPKCNFHNFARNIKCLRCNELFQERIKQLQQDQDHLPLKKGDWICNKCNFLNFAKNTRCFQCQENPPKRQLNPGEWECPSCNYINFRRNMVCLKCDHRRPKASNVSDSSFQSQHEDKDHHENCKLNLLRSNGNSNYQSSMVMYRNRSRGSNTWRFVDNVNDDQNRSNSWNDNSQFINFPIVGGMTEFSENAQKREEWKKDMLRRSKGLVGTSESDDEFWSDDNENRKRIFDLTDDEEIDEWFGNGKNGRNKIPESK 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00559 552 ProSiteProfiles Zinc finger RanBP2 type profile. 335 364 IPR001876 -
Bva11g00559 552 ProSiteProfiles Zinc finger RanBP2 type profile. 368 397 IPR001876 -
Bva11g00559 552 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 286 316 - -
Bva11g00559 552 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 1 271 - -
Bva11g00559 552 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 311 543 - -
Bva11g00559 552 MobiDBLite consensus disorder prediction 61 76 - -
Bva11g00559 552 ProSitePatterns Zinc finger RanBP2-type signature. 295 314 IPR001876 -
Bva11g00559 552 ProSitePatterns Zinc finger RanBP2-type signature. 339 358 IPR001876 -
Bva11g00559 552 ProSiteProfiles Zinc finger RanBP2 type profile. 291 315 IPR001876 -
Bva11g00559 552 ProSitePatterns Zinc finger RanBP2-type signature. 372 391 IPR001876 -
Bva11g00559 552 SUPERFAMILY Ran binding protein zinc finger-like 362 398 IPR036443 -
Bva11g00559 552 SMART zf_4 293 317 IPR001876 -
Bva11g00559 552 SMART zf_4 337 361 IPR001876 -
Bva11g00559 552 SMART zf_4 370 394 IPR001876 -
Bva11g00559 552 MobiDBLite consensus disorder prediction 396 417 - -
Bva11g00559 552 PANTHER ZINC FINGER PROTEIN 1 271 - -
Bva11g00559 552 PANTHER ZINC FINGER PROTEIN 286 316 - -
Bva11g00559 552 PANTHER ZINC FINGER PROTEIN 311 543 - -
Bva11g00559 552 Gene3D - 326 364 - -
Bva11g00559 552 Gene3D - 282 317 - -
Bva11g00559 552 Gene3D - 365 398 - -
Bva11g00559 552 SUPERFAMILY Ran binding protein zinc finger-like 285 316 IPR036443 -
Bva11g00559 552 MobiDBLite consensus disorder prediction 61 87 - -
Bva11g00559 552 Pfam Zn-finger in Ran binding protein and others 291 314 IPR001876 -
Bva11g00559 552 Pfam Zn-finger in Ran binding protein and others 335 359 IPR001876 -
Bva11g00559 552 Pfam Zn-finger in Ran binding protein and others 370 392 IPR001876 -
Bva11g00559 552 SUPERFAMILY Ran binding protein zinc finger-like 329 362 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00559 Bva-Chr11 9072011 9075523 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00559 39 396 EF-hand Containing Proteins AT1G55040 38.281 8.65e-69 236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00559 11 9072011 9075523 Bva11g00559 11 9072011 9075523 ECH