Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00556 ATGGCTGCTTCCAAGGCGTTGATGGCTTCTTTAACCCACTTACGTCCACTAACGTGCGCCGCTTCGGCATCAGCATCTTATCCTACACGGCTGGTGCCGCAGCCACCGGACCTCATCAAATGGGTTAGGAGAGAAGGTGGGTTCGTGCACCGGGCGGTGAAGATAACACAAGATGAATCCAAAGGTCTGGGACTTGTGGCTGCCGAAGAAATCCCAAGAGGAAGTGAGATTATTGTTCTCCCAGAACACTTACCATTGCGGTTTAGGTCTGTTGAATTGGAGCATGAAGATGGGCTTCATTCTGTTCTAGTAAATTTGGCACGCCAAATTCCTGAGGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTGCAGGAAAGAGCAAAAGTTGGATCATTTTGGTGGCCATATATCAGCAATCTCCCAGAGACATACAGTGTGCCTATCTTTTTTCCAGGGGAGGATATAAAGAACTTGCAATATGCTCCTCTTCTGCACCAGGTAAACAAAAGATGTAGGTTTCTTCTTGATTTTGAGCGAGAAGTCAAGCATTCCCTTGAAAATCTGAAACCAGATAATCATCCATTTGGTGGCCAAGAAGTAGATGCATCTTCTCTTGGATGGGCGATGTCAGCAGTCTCATCTAGGGCATTCAGGTTATATGGTAACAAGCGTATAGATGGAACTCACATAGACATACCCATGATGCTTCCTCTTATTGATATGTGCAACCACAGTTTCAATCCAAATGCACAAATTGTTCAGGAACAAGATCCTGGCAACTTGAAGATGCTAGTGAAGGTTGTGGCTGAGACCGCAATCAAGCCAGATGATCCTTTGTTACTTAACTATGGTTGTTTGAACAATGATCTTTTGCTTCTTGACTATGGATTTGTCATACACTCAAACCCTTACGACTGTATCGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTAGTTCGCCCAGTTTCTCAGCGCCAGCTCCATGGCAGCAACAGATCTTATTTCAGCTAAATCTAGCTGGAGAAGCACCAGACCTCAAGGTTAGCTTAGGTGGTACCGAAATCGTGGAGGGTCGGTTCATGGCGGCTTTGCGAGTACTTCTTGCAAGTGATGCAGAAACTGTGCAGAACTGTGAACTCAACACACTCAAGTCTACATCATCTGAAGCTCCTCTTGGTGTTGCAAATGAAATAGCTGCATTTCGTTCGGTAATTGCTCTCTGTGTGATTGCTCTTGGACACTTCCCTACCAAAATAATGGATGATGAAGCACTGCTGGAAGAGAGTGCTTCGGGCTCAACTCAGTTAGCTACTCAGTTCAGGATCCAAAAGAAATCTGTGATTATAGATGTGATGAGAGATCTCACTAGGAGGGTAAAGCTTCTCTCGTCAAAGGAGACAGTCAACTGCTG 1436 0.4533 MAASKALMASLTHLRPLTCAASASASYPTRLVPQPPDLIKWVRREGGFVHRAVKITQDESKGLGLVAAEEIPRGSEIIVLPEHLPLRFRSVELEHEDGLHSVLVNLARQIPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETYSVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFEREVKHSLENLKPDNHPFGGQEVDASSLGWAMSAVSSRAFRLYGNKRIDGTHIDIPMMLPLIDMCNHSFNPNAQIVQEQDPGNLKMLVKVVAETAIKPDDPLLLNYGCLNNDLLLLDYGFVIHSNPYDCIELKYDGALLDAASMAAGVSSPSFSAPAPWQQQILFQLNLAGEAPDLKVSLGGTEIVEGRFMAALRVLLASDAETVQNCELNTLKSTSSEAPLGVANEIAAFRSVIALCVIALGHFPTKIMDDEALLEESASGSTQLATQFRIQKKSVIIDVMRDLTRRVKLLSSKETVNC 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00556 478 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 295 474 IPR036464 -
Bva11g00556 478 Pfam Rubisco LSMT substrate-binding 334 455 IPR015353 -
Bva11g00556 478 Gene3D - 329 474 IPR036464 -
Bva11g00556 478 PANTHER F21J9.27 5 476 - -
Bva11g00556 478 CDD SET_LSMT 52 299 - -
Bva11g00556 478 Pfam SET domain 62 285 IPR001214 GO:0005515
Bva11g00556 478 SUPERFAMILY SET domain 33 303 IPR046341 -
Bva11g00556 478 Gene3D set domain protein methyltransferase, domain 1 6 298 - -
Bva11g00556 478 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 476 - -
Bva11g00556 478 SMART set_7 51 291 IPR001214 GO:0005515
Bva11g00556 478 ProSiteProfiles SET domain profile. 51 285 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00556 Bva-Chr11 9049404 9053785 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva11g00556 SET 4.5e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00556 11 9049404 9053785 Bva11g00556 11 9049404 9053785 ECH