Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00549 ATGGGTGCCTTCAACGCTCTCAGACTCAGAGCGTCAAAACTTGTCTCGTGGAAATCCACTGGCAGGCTTCAGCAAACCCTCGCTGGCTGTGTGGAGCGGAGGGGCAAGAGTTTACACTCTGGAAAGGTTTCAACAGTGAGATTGCATCCAGGATTTGCAGGCGAAGGGAGGTACTTTGATTTTCGGTCTAATTTGATTCCAGCTTCCATTGATTATGCTCAGGAGTCTCCCCTATGTACCACATTGTGTAAAGATGGTGTTAGAATACGAACCGTTGAGCACTTACTTTCTGCTTTAGAGGGTATTGGGGTTGATAATTGCAGAATTGAAATAGTGAATTTGGATGATGAAGGACATGATGCTGAGATTCCAATTCTTGATGGGTCAGCGAGTGAATGGGTGGCAGCAGTGGAAGAAGTTGGTTTAAAGGTGGCAATTGATCATCACGGTAAAAACTGTGAAAGGATGGCACCACAAGTGGATGAACCAGTGTATGTATGGAGGGGTGACAGTTTTGTTGCTGCATTTCCTTCAAGAATGGTTCATATAACTTACGGCATTAACTTTCCACAGGCACATGCTATTGGCTCTCAGTGGTTTTCTACAACCCCTTTGGACAATTTGGATTATTCCAAACAGATAGCTTCGTCAAGAACATTCTGTATTTATGAGGAGATTGAGCAAATGCGCACAGCTGGACTGATAAAGGGAGGTTCTTTAGAAAATGCCATTGTTTGCAGtgCCAGTAAAGGTTGGTTGAATCCACCTCTGCGTTTCAATGATGAACCTTGTCGCCATAAGGTCTTAGATCTCATTGGTGATCTCTCCCTTTTTGCTCAGTATGGGAATCAAGGTCTTCCTCTGGCGCACATAGTAGCTTACAAGGGTGGCCATGCTTTACATGCTGATCTTCTCATTACATGCTCTACCGGCCAAGATAAGCACAAAGAGTACTGTTTACCAGCTTCAACCACTTGTCGTATCTACCTTTCAACGCACAAGAAGCGATTTCCCTCTGTAAATCACTTTTTCGCTTTCGAAGCTGCCAGAGGAATTTCCGCCACGACGGAGGCTCCTGAGCCCCACGCGCCGCTCCTCCGGTCCCGACAAGGAAACACCGATGCCGCACGTACTCCCAGTCTAGCTGTCCTCCTCGGGCGCGCTGCGGGCCGCCGTGGCCCTTCCATGCTGGTTCGGGAAACGGCCGCTCGTCAGCTAGAGGAGCGGCGAGCTGATTGGGGATACTCGAAGCCGGTGGTGGCGCTTGACATGACGTGGAATATGGCATTCGTTCTGGTGTCGATTGTCATGTTGATTTGTACAATTGATGAGAACCCGAACATGCCGATCCGGCTGTGGATCTGCGGCTATGCTCTGCAGTGCTTGGTTCATGTGGTGTTGGTGTGGCTCGAGTATAGGAGGAGGAATAGGAGGGAGTTGCGGAGCCGGAGAGCTCAGGACGTAGAGAGTCGAGGCGGCAACGTTGATGACGCCGACGAGAGTGAAAATGAGGAAGTTGGAGATGACAGCTCAGGGCGTTTGTCTCGCTCTGGaTACGCAAAACGATGTGAATCGGTGAATACCATGGTATCATTCCTTTGGTGGATTGTTGGCTTTTATTGGGTGGTCTCTGGCGGTGATATCCTTCTGCAAGATGCTCCACGTTTGTATTGGTTAGCTGTTGTTTTTCTGGCATTTGACGTTTTCTTTGCCATCTTTTGTGTTGTTTTGGCTTGCTTGATTGGCGTTGCCCTCTGTTGTTGTCTGCCGTGCATCATTGCCATTCTCTATGCCGTAGCAGGACAGGAAGGTGCGTCAGATGCAGATATCAGTGTCCTTCCAAAATACAGATTTCATGTGTCAAGCAATGAGGAAAAGCCTAATAATGGTGGAGCTGGAACAATGgtacccatagaatcaagcaGTGGCTACTTAGCAAATGAACGCACACTTTTACCTGAGGATGCGGAATGTTGTATATGCCTCACTTCATATGAGGATGGAGCAGAGCTCCATGCTTTACCCTGCAACCATCATTTCCATTCCTCATGCATATCAAAATGGTTAAGGATGAATGCAACTTGTCCTCTCTGCAAGTTCAACATACTCAAGGGAAACGAACagttttg 2129 0.473 MGAFNALRLRASKLVSWKSTGRLQQTLAGCVERRGKSLHSGKVSTVRLHPGFAGEGRYFDFRSNLIPASIDYAQESPLCTTLCKDGVRIRTVEHLLSALEGIGVDNCRIEIVNLDDEGHDAEIPILDGSASEWVAAVEEVGLKVAIDHHGKNCERMAPQVDEPVYVWRGDSFVAAFPSRMVHITYGINFPQAHAIGSQWFSTTPLDNLDYSKQIASSRTFCIYEEIEQMRTAGLIKGGSLENAIVCSASKGWLNPPLRFNDEPCRHKVLDLIGDLSLFAQYGNQGLPLAHIVAYKGGHALHADLLITCSTGQDKHKEYCLPASTTCRIYLSTHKKRFPSVNHFFAFEAARGISATTEAPEPHAPLLRSRQGNTDAARTPSLAVLLGRAAGRRGPSMLVRETAARQLEERRADWGYSKPVVALDMTWNMAFVLVSIVMLICTIDENPNMPIRLWICGYALQCLVHVVLVWLEYRRRNRRELRSRRAQDVESRGGNVDDADESENEEVGDDSSGRLSRSGYAKRCESVNTMVSFLWWIVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGVALCCCLPCIIAILYAVAGQEGASDADISVLPKYRFHVSSNEEKPNNGGAGTMVPIESSSGYLANERTLLPEDAECCICLTSYEDGAELHALPCNHHFHSSCISKWLRMNATCPLCKFNILKGNEQF 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00549 709 CDD RING-H2_RNF111_like 657 701 - -
Bva11g00549 709 Gene3D lpxc deacetylase, domain 1 22 148 IPR015870 GO:0008759|GO:0009245
Bva11g00549 709 Gene3D lpxc deacetylase, domain 2 158 323 IPR011334 GO:0008759|GO:0009245
Bva11g00549 709 Hamap UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 22 313 IPR004463 GO:0008759|GO:0009245
Bva11g00549 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 706 IPR013083 -
Bva11g00549 709 SUPERFAMILY RING/U-box 647 703 - -
Bva11g00549 709 SUPERFAMILY Ribosomal protein S5 domain 2-like 162 305 IPR020568 -
Bva11g00549 709 Pfam Ring finger domain 657 699 IPR001841 -
Bva11g00549 709 SUPERFAMILY Ribosomal protein S5 domain 2-like 23 143 IPR020568 -
Bva11g00549 709 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 357 708 - -
Bva11g00549 709 TIGRFAM lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 24 309 IPR004463 GO:0008759|GO:0009245
Bva11g00549 709 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 24 305 IPR004463 GO:0008759|GO:0009245
Bva11g00549 709 MobiDBLite consensus disorder prediction 489 516 - -
Bva11g00549 709 ProSiteProfiles Zinc finger RING-type profile. 658 699 IPR001841 -
Bva11g00549 709 SMART ring_2 658 698 IPR001841 -
Bva11g00549 709 PANTHER TARGET OF ERK KINASE MPK-1 357 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00549 Bva-Chr11 8995397 9005478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00549 354 708 C3H Transcription Factor Family AT1G68070 67.318 2.02e-175 503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00549 11 8995397 9005478 Bva11g00549 11 8995397 9005478 ECH