Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00542 ATGAGCAACACTGGAAGCAGCTATAGTTCCTGCAAGGGTGGCGCTGCTGCCACTCCTGCTACTGAAAACATGGGTTCTGATCAGTTCCCGGCGGGACTCAGGGTTCTGGTGGTGGATGACGACGGCACCACCTTGAAAATCATTGAACAAATGTCTCGCCGATGTCGTTATAAAGTTACCACATGTTTTCGAGCTACTATTGCTTTGGACCTTCTGCGGGAGAAGAAAGGGAGTTTTGATGTGGTACTAAGTGATGTTCATATGCCGGACATGGATGGCTATAAACTCCTTGAACATGTTGGGCTGGAAATGGATCTTCCTGTTATTATGATGTCTGCTGATAGTAGAACAAGTGCTGTGATGAAGGGAATTAGACATGGAGCTTGTGATTATTTGATTAAGCCTGTACGTGAGGAAGAATTGAAGAATATATGGCAGCATGTGGTTAGGAAAAAATGGAATGAAAATAAGGAACATGAAAATTCTGGCAGCTTGGATGACAATGATAGGAATAAACGAGGAAATGATGAAGCTGAATATACTTCTTCTGTTATTGATGCAGCAGAAGGAATAGTTAAAGCACCTAAAAGGAGGAGCAATTCAaaggaagatgatgatggtgaTCTGGAGAATGATGATCCATCCACATCAAAGAAGCCCCGTGTGGTCTGGTCAGTGGAGCTGCATCAACAATTTGTCAGTGCTGTGAACCAACTTGGCCTTGACAAGGCTGTACCGAAGAGAATTCTTGAATTGATGAACGTACCTGGTTTGACTAGAGAAAATGTTGCCAGCCATTTGCAGAAATTTAGGCTTTATTTAAAGAGAATAAGTGGAGCTGCACAGCAACAAAACTCAATTTCGGGGCCTGTAGAGACCAATGTCAAACTGGGTGGACTTGGAAGATTTGACATCCAAGCTTTGGCTGCCAGCGGCCAAGTTCCTCCACAAACATTAGCTGCCCTTCATGCTGAGTTTTTAGGTAGTCCAGCTGGTAACTTAGTTCCAACAGTGGACCAGACTGCTCTCTTGCAAGCATCCATTCACGGGTCCAAGCATTCCCCTGCAGAACATGGTGTGGCATATGGTCAGCCTCTGGTAAAATGTGCTTCCAACATTGCCAAAAGTTTTCCTCAGGGAATCATAAACGTAGAAGATGCATCTCCAACATATGGAGCTTGGCCACTGTCTAGCACCATTGGTTCATTGGGACCCAATAGTAGTCTTGAAGGGATTGGCCCTCAGAGTAATAACATGATGGATATGTTGCAGCATCAGCACCAGCATAGACAGCTGCAACAACAGAAGCAACAGCAACAGTTGCAGCAGCAGTCAATAATACATGATCAAAGTCGTTCAATTAATGTGCAACCATCTTGCTTGGTGGTCCCTTCTCAATCCTCTGGCACTCTCCAGGCAGGAAATATTCACACCTCTGTCAATCAGAATTGCAACTTTGGCAGGCATCCATTTATTGATTATAGTCTCTTTTCACCTCAAGCAAATAATTCTTCATTAAATGTTGCTCAATTTCCTGATGGGGAAATCAGAGCGAGAGGTGTTCTTTCGGGGTATACTGCTCCTAGCTCCATTTCTACTTCACCTTTAACTGGTTCAATAACTACCGACAATAGCAATATCCAGCAGCTTAAAAACTCAACTTTGACATTAGGTGCTTTGAGGCAATTCCCGGCTCGTACACCTAATGTATCTGATATCCAAGGTCCCTATTGCAGTGGACCTGGTGATGCAATTGAACAAGGGGCTCTTAGGAATCTTGGATTTGTTGGCAAAGGTACCAATATTCCAAGCAGGTTTGCTGCACATGaaattgaaacaataaatgagTTTGGTCAAGGAAACATGTCTGTAAATAGCAATGATAACACGGTGAAGGAGGAGCCAAATATTGATTATATGGATAATCCAAAAGGGGGCTTCCCAGCTTTTCGAAGATATTG 1961 0.4284 MSNTGSSYSSCKGGAAATPATENMGSDQFPAGLRVLVVDDDGTTLKIIEQMSRRCRYKVTTCFRATIALDLLREKKGSFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSADSRTSAVMKGIRHGACDYLIKPVREEELKNIWQHVVRKKWNENKEHENSGSLDDNDRNKRGNDEAEYTSSVIDAAEGIVKAPKRRSNSKEDDDGDLENDDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRISGAAQQQNSISGPVETNVKLGGLGRFDIQALAASGQVPPQTLAALHAEFLGSPAGNLVPTVDQTALLQASIHGSKHSPAEHGVAYGQPLVKCASNIAKSFPQGIINVEDASPTYGAWPLSSTIGSLGPNSSLEGIGPQSNNMMDMLQHQHQHRQLQQQKQQQQLQQQSIIHDQSRSINVQPSCLVVPSQSSGTLQAGNIHTSVNQNCNFGRHPFIDYSLFSPQANNSSLNVAQFPDGEIRARGVLSGYTAPSSISTSPLTGSITTDNSNIQQLKNSTLTLGALRQFPARTPNVSDIQGPYCSGPGDAIEQGALRNLGFVGKGTNIPSRFAAHEIETINEFGQGNMSVNSNDNTVKEEPNIDYMDNPKGGFPAFRRY 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00542 653 CDD REC_typeB_ARR-like 35 149 - -
Bva11g00542 653 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 395 IPR045279 GO:0009736
Bva11g00542 653 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 219 272 IPR006447 GO:0003677
Bva11g00542 653 MobiDBLite consensus disorder prediction 424 446 - -
Bva11g00542 653 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 275 IPR017930 -
Bva11g00542 653 PANTHER TWO-COMPONENT RESPONSE REGULATOR 397 577 IPR045279 GO:0009736
Bva11g00542 653 Coils Coil 422 442 - -
Bva11g00542 653 Gene3D - 215 278 - -
Bva11g00542 653 MobiDBLite consensus disorder prediction 191 205 - -
Bva11g00542 653 MobiDBLite consensus disorder prediction 1 23 - -
Bva11g00542 653 SUPERFAMILY Homeodomain-like 216 276 IPR009057 -
Bva11g00542 653 SMART REC_2 33 145 IPR001789 GO:0000160
Bva11g00542 653 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Bva11g00542 653 SUPERFAMILY CheY-like 32 157 IPR011006 -
Bva11g00542 653 Gene3D - 33 205 - -
Bva11g00542 653 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Bva11g00542 653 MobiDBLite consensus disorder prediction 156 220 - -
Bva11g00542 653 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 395 - -
Bva11g00542 653 MobiDBLite consensus disorder prediction 156 179 - -
Bva11g00542 653 Pfam Myb-like DNA-binding domain 221 269 IPR001005 -
Bva11g00542 653 PANTHER TWO-COMPONENT RESPONSE REGULATOR 397 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00542 Bva-Chr11 8942990 8949049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00542 67 331 Response Regulator Gene Family AT3G16857 54.930 5.02e-96 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Bva11g00542 Response_reg 4.7e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00542 11 8942990 8949049 Bva11g00542 11 8942990 8949049 ECH