LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva11g00519	ATGGGTTCCCGCTTCagcttcttccttttcttcaccttcttcttcctctgcaaCTTTTCCCATCTCTCAATTGCCCAACGACTCAATTTCACCTCCTTCAACGGCTCAATCTCCCCATGGAGCCCAACCCAGAACCAGACCCTTCTCTCTCCAAATTCTGAATTCTCTGCTGGGTTTCTCTCTGTACCCAATTCCCGGAATCAGTTTAACTTCTCTGTTTGGTTCACCAAAGTCCCTTCAAATGCTGTTGTTTGGTCTGCAAAGTCATCGGTCAACTCCTCTGATGCCATTGTCTTCGACAGCTCTGCTTCTCTCACCATCAACTCCAGAGGCCAGCTTCTCCTCAATGATTCTTCTGGGAAAATCCTATGGACCCCAGAGAACCCTTCAACCAATTCGAGCTCTGCAACTCTCTTTCTAGACAACCGTGGAAATTTGAAGTTTGGGAGTTGGGAAAGCTTTCAATTCCCAACAAACACATTTCTCCCCAACCAGAGCATCCAGGAGACTATTTTCTCCCTGAACGGAAAATTCAAGTTCGTCAATTCTTTGAATTTGGTCCTCAACTCCACCTCTGATCAGTACTATAGCACGCCTAGTCCTCTGAAGAGCATGGATGAGGCTGGGAGAGTGGACATGGTGAGTAGCTTCTTCCTCACTTCCGATTATGGCGATACACGGTTAAGAAAACTCGTGCTTGACGATGATGGCAACTTGAGAATCTACAGTTTCTACCCAGAAGAGCAAAACCAATGGAAAATGGTGTGGGTAGCACTCCAAGAACAGTGCAAAATCAAAGGCAAATGTGGAGCAAACGCTATCTGTATGCCTGGAGAAGACTCTTACAGTTCTACCTACTGCGTTTGCCCTTCTGGGTTCATCGAAAATCCAGGTGGGGTTCAACAATCTGGGTGCAGCAGAAGAACCCAGCTAACCACCAACACCAAGTTCCTTCGTTTAGATTATGTCAATTTCACCAGCAATACGGGCCAGATGACGCAAATCGAAGCCAGAAACTTCACATTCTGTGAAGCAAGATGCAGTTCAGACCCAGAATGTCTCGGATTTGGGTTCAAATACGATGGATCAGCTTACTGCGTTGTGTTGAAGCAGCTTCTATTTGGGTATTGGTCTCCGGGTACAGAAACTGCGCTGTTCCTCAAAGTTGATAGATCTGAAACCGCAACCTCGAATTTCACCGGCATGACGGAGATTCTGCAGACAACGTGCCCGGTTCAGATCAGCCTCCCTCTGCCGCCGAAAGATTCAAACACCACCACACGAAACATCGTGATAATTTGTACCCTTTTCGCTGCTGAGCTCATTTCTGGTATTGCTTTCTTCTGGTCTTTCCTCAAGAGGTACATCAAGTACAGAGACATGGCTACCACTCTGGGTCTCGAGCTTCTCCCCGCCGGTGGTCCCAAACGTTTCTCGTATTCCGAGCTCAAAGCCGCCACCAATGACTTCTCCAACCTCATCGGAAAAGGTGGGTTTGGGGACGTTTATAAAGGGGAGTTGTCGGACCACCGTATCGTCGCCGTGAAGTGCCTGAAAAATGTCACTGGCGGCGACCGCGAGTTCTGGGCCGAGGTCACCATCATTGCCAGAATGCACCATCTCAACTTGGTTCGCTTGTGGGGTTTCTGTGCCGAGAAAGGTCAAAGGATACTGGTTTACGAGTATATTCCGGGCGGGTCATTGGACAAGTACTTGTTCCGACGTCGGGTTGTACCCGTTAACAGCAATGGAGAAGAAGCAACACCGGGTCATGATCCGGTTCCGGATCCAAATACCATGCAAAAACCCATTCTTGATTGGAATGTCAGGTACAGGATTGCTCTTGGAGTTGCAAGGGCAATTGCCTATCTGCACGAGGAGTGTTTGGAATGGGTTTTGCATTGTGATATCAAGCCAGAAAATATATTGCTTGGTGATGACTTTTGCCcaaaaatatcagattttggGTTGGCTAAACTCCGAAAGAAACAAGACATGGTGACTATGTCAAGGAGACGAGGCACACCAGGTTATATGGCTCCTGAATGGATTACCACAGAACCAATTACCTCAAAAGcagatgtttatagttttggaatGGTCTTGTTAGAGCTTGTGACTGGGATCAGAAACTTTGAAATTCAAGGGTCTGAAATGAAAAGTGAAGAGTGGTATTTTCCTGGATGGGCTTATGATAAGATGTTTAAGGAGACAAGAGTAGAAGACATTTTGGACAATGAGATTAAGTATTGTTATGATAGCAGGGCTCATTTTGATTTGGTGACTAGGATGGTAAAGACAGCCATGTGGTGCCTTCAAGATAGGCCTGAGTTGAGGCCAACCATGGGAAAGGTGGCTAAGATGTTGGAAGGCACTGTGGAGATCATGGAACCTAAGAAACCCACAGTATTTTTCCTTGGAGGTGAATA	2429	0.4549	MGSRFSFFLFFTFFFLCNFSHLSIAQRLNFTSFNGSISPWSPTQNQTLLSPNSEFSAGFLSVPNSRNQFNFSVWFTKVPSNAVVWSAKSSVNSSDAIVFDSSASLTINSRGQLLLNDSSGKILWTPENPSTNSSSATLFLDNRGNLKFGSWESFQFPTNTFLPNQSIQETIFSLNGKFKFVNSLNLVLNSTSDQYYSTPSPLKSMDEAGRVDMVSSFFLTSDYGDTRLRKLVLDDDGNLRIYSFYPEEQNQWKMVWVALQEQCKIKGKCGANAICMPGEDSYSSTYCVCPSGFIENPGGVQQSGCSRRTQLTTNTKFLRLDYVNFTSNTGQMTQIEARNFTFCEARCSSDPECLGFGFKYDGSAYCVVLKQLLFGYWSPGTETALFLKVDRSETATSNFTGMTEILQTTCPVQISLPLPPKDSNTTTRNIVIICTLFAAELISGIAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFSYSELKAATNDFSNLIGKGGFGDVYKGELSDHRIVAVKCLKNVTGGDREFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEYIPGGSLDKYLFRRRVVPVNSNGEEATPGHDPVPDPNTMQKPILDWNVRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLGDDFCPKISDFGLAKLRKKQDMVTMSRRRGTPGYMAPEWITTEPITSKADVYSFGMVLLELVTGIRNFEIQGSEMKSEEWYFPGWAYDKMFKETRVEDILDNEIKYCYDSRAHFDLVTRMVKTAMWCLQDRPELRPTMGKVAKMLEGTVEIMEPKKPTVFFLGGE	809

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva11g00519	809	SMART	serkin_6	488	789	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva11g00519	809	Gene3D	Transferase(Phosphotransferase) domain 1	566	801	-	-
	Bva11g00519	809	SUPERFAMILY	Protein kinase-like (PK-like)	470	790	IPR011009	-
	Bva11g00519	809	PANTHER	OS07G0415500 PROTEIN	9	807	-	-
	Bva11g00519	809	Pfam	D-mannose binding lectin	94	168	IPR001480	-
	Bva11g00519	809	Pfam	Protein kinase domain	492	785	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva11g00519	809	SMART	blect_4	43	157	IPR001480	-
	Bva11g00519	809	ProSiteProfiles	PAN/Apple domain profile.	305	390	IPR003609	-
	Bva11g00519	809	Pfam	S-locus glycoprotein domain	224	294	IPR000858	GO:0048544
	Bva11g00519	809	PIRSF	SRK	2	809	IPR024171	GO:0004674
	Bva11g00519	809	Gene3D	-	40	160	IPR036426	-
	Bva11g00519	809	ProSiteProfiles	Protein kinase domain profile.	488	793	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva11g00519	809	ProSitePatterns	Protein kinases ATP-binding region signature.	494	516	IPR017441	GO:0005524
	Bva11g00519	809	CDD	STKc_IRAK	494	791	-	-
	Bva11g00519	809	Gene3D	Phosphorylase Kinase; domain 1	462	562	-	-
	Bva11g00519	809	PANTHER	OS10G0101000 PROTEIN	9	807	-	-
	Bva11g00519	809	ProSiteProfiles	Bulb-type lectin domain profile.	33	161	IPR001480	-
	Bva11g00519	809	SUPERFAMILY	alpha-D-mannose-specific plant lectins	69	248	IPR036426	-
	Bva11g00519	809	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	632	644	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva11g00519	Bva-Chr11	8803504	8806233	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva11g00519	332	801	Receptor kinase-like Gene Family	AT4G18250	33.811	1.20e-75	258

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Bva11g00519		Pkinase	4.3e-47	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva11g00519	11	8803504	8806233	Bva11g00519	11	8803504	8806233	ECH