Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00510 ATGATTAGAGGGAAGGATCTTGACTCTGAGGGGGAGAACTCTCGGAGCAAGCTCTCAGGGCATCTTTCTGAGCTAACCAAGGAAAACCCAGAAGTGAAAATGGGTTTTCCAGAGAAAGGTATTGACTTTCTGAAAGAATCAGAGATGACTGTTGATGGGGTTCAATCGAAATCCACTACGGTTGGGATCTCAAGCTTGCAAGAGCTGACTCTGAGCTACCTCTGTGATAACCCAAAATTGGGTCTTACTGATAAAGAGATTCCTGGGAAAAGTTTGCTGAATTCCTTGGAAAAAGTCGGCTACAAAGGTAAAGAAGTCATCGTTTCTGAGAATTCAAATCAAGATAAGAAATGGGTGGAAAGGGATTTTCTGAGTCTGAGTGAGACTAGAGAGAATTCTTCAAAGCGATCCATGGAAGAAGAGGGTGAAAGGGAAAATAGGGACAAAAAGCCTAAGCTTGAGACTCTTAATCTCTCTCTTGCTTTGCCTGATGTCTCACTTTCTCTTACAGCTTCAAACGCGCTTCAAAATGGTGATCAACCAGTGAGACCAAAGCCTACGAGGCCATCAACCAATACACACACCACATATTCAAATGATTATACAGCAGCTTCTCTATCATACTCGTATTCTCACCCATTTTCCCACAACCCCAGTTGCTCCCTTACCCGTAATTCTACTGATTTTGATTATTCAGTGAGCAAAGATGATCAAATTTGGAATTGTGGGGAGGGGACTAATGGTTCAGTTCATAGTAGGTTCAAGCCAATGGGAGATGGGGTTGCTTTGTCCAATCATGGTGGTGGAATTAGTTCTTTTATGCagaataataatcaatatataactACAAGTTCAGATAAccattcttttttcccctcgGATTTGCCTGCAAGGCCAAGGTTTGGGGCTCAGTCAGGGGACTCAAGAGGGAGAAATTCTGAGAATCTGAGAGGGATGGATGGTTTAGATGGTGGTGGGAAAGTGAGGAAAGTTTCTAGACCAGAGAGAATTCTCAGAGAAATTGTGTCTGAGTCTATCCCCAGCATGTCTGTGATAGTTCAGGAACTTGCCGATGAGGTAATTGCATCAACTAAGGAGTACTTGAAAAATCTTATAGAATCTCATGAGAAGAAAGAGGAATTGGTGAGCCTCCAAAACCGGCTCGAGCGAAGATCCGACCTCACCAAAGAGACTCTTTCCAAGTGCCACAAAGTGCAACTGGAGATTTTACTTGCTATCAAGATGGGGCTAGGAAGTTTCTTGTCtgtaaaatttgaatcttCTGAGATGGTAGAGATGTTCTTGTATACTAGGTGTAGAAATGTGAACTGCAAGAGTGTACTGCCTGTTGATGAATGTGACTGCAAGATTTGCTCTGGAAACAAAGGGTTTTGTGGCAATTGCATGTGTCCTGTCTGCTTGAACTTTGATTGTGCTAGTAACACGTGCAGTTGGGTTGGTTGTGATGTTTGTTCCCACTGGTGCCATGCTGCCTGTGGCATTCAGAGGAATCTTATCAAACCTGGGCCTAGCTTGAAGGGAGCTTCAGGGACCACAGAAGTGCAGTTTCATTGCATTGGCTGTGGACATTCTTCAGAAATGTTTGGGTTTGTCAAAGATGTTTTCATTTGTTGTGCAAAGGATTGGGGTCTAGATACCTTGATGAAGGAGCTTGACTGTGTGAGGAGGATTTTCAACAGAAGCGAAGATCGGAAAGGGAGGGAATTGCATGTTAAAGCTGATGACATGGTGTTGAAGCTTCAAACAAAAATGGTCTCTCCTTTGGATGCCTGCAATCTGATGATCCAATTTTTCAACTATGCAGATAACATGTCAGATTTTCCTGCTTCTGGTATTTCTTCAAAGGCTTTCACAGCAACAAAACCAAACCTTAGGAAAGATACAGCAGCAATTTCACAATCTAATTCTCTAATACCCAATTATACTTTTGACTCAAGTTATTCGAGGTCACATCGCAATGTGTTGTCAAATGATCTGCACCAGAAAGATCTCAAATCCTCCATCTTAACTGAGTTGAAAAATGACGATGATTTCCAGTTGGGAGCTTTACTAAGGAAAGGTGGGCCTGAGAGCTTGGAGAACATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTCCAAACCAAAGCCGATGAAGCGCTGAGAGAAGCCGAAGGGTTCCAGAAGATGATTAGAACTAAGACTGCACAAATGGAAGAAGAGTATGCTGAGAAGCTTTCCAAGCTTTGTTTGCATGAGACCGAGGAACGGCGGTTGAAGAAATCGGAGGAACTCAAAGTGTTGGAAAATTCTCACTGTGATTACTATAAAATGAAGATAAGAATGCAAGCTGAGATTGGTGGTTTGTTGGAAAGAATGGAGGCAACCAAACAGCAATA 2399 0.4185 MIRGKDLDSEGENSRSKLSGHLSELTKENPEVKMGFPEKGIDFLKESEMTVDGVQSKSTTVGISSLQELTLSYLCDNPKLGLTDKEIPGKSLLNSLEKVGYKGKEVIVSENSNQDKKWVERDFLSLSETRENSSKRSMEEEGERENRDKKPKLETLNLSLALPDVSLSLTASNALQNGDQPVRPKPTRPSTNTHTTYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDFDYSVSKDDQIWNCGEGTNGSVHSRFKPMGDGVALSNHGGGISSFMQNNNQYITTSSDNHSFFPSDLPARPRFGAQSGDSRGRNSENLRGMDGLDGGGKVRKVSRPERILREIVSESIPSMSVIVQELADEVIASTKEYLKNLIESHEKKEELVSLQNRLERRSDLTKETLSKCHKVQLEILLAIKMGLGSFLSVKFESSEMVEMFLYTRCRNVNCKSVLPVDECDCKICSGNKGFCGNCMCPVCLNFDCASNTCSWVGCDVCSHWCHAACGIQRNLIKPGPSLKGASGTTEVQFHCIGCGHSSEMFGFVKDVFICCAKDWGLDTLMKELDCVRRIFNRSEDRKGRELHVKADDMVLKLQTKMVSPLDACNLMIQFFNYADNMSDFPASGISSKAFTATKPNLRKDTAAISQSNSLIPNYTFDSSYSRSHRNVLSNDLHQKDLKSSILTELKNDDDFQLGALLRKGGPESLENIVRIKEAEARMFQTKADEALREAEGFQKMIRTKTAQMEEEYAEKLSKLCLHETEERRLKKSEELKVLENSHCDYYKMKIRMQAEIGGLLERMEATKQQ 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00510 799 Pfam PHD - plant homeodomain finger protein 439 563 IPR032881 -
Bva11g00510 799 PANTHER PROTEIN OBERON 3 5 799 - -
Bva11g00510 799 MobiDBLite consensus disorder prediction 173 198 - -
Bva11g00510 799 CDD PHD_OBE1_like 469 528 - -
Bva11g00510 799 Coils Coil 751 771 - -
Bva11g00510 799 MobiDBLite consensus disorder prediction 1 31 - -
Bva11g00510 799 Pfam Coiled-coil region of Oberon 661 790 IPR032535 -
Bva11g00510 799 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 352 374 IPR004082 -
Bva11g00510 799 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 697 717 IPR004082 -
Bva11g00510 799 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 391 406 IPR004082 -
Bva11g00510 799 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 430 451 IPR004082 -
Bva11g00510 799 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 476 496 IPR004082 -
Bva11g00510 799 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 549 568 IPR004082 -
Bva11g00510 799 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 736 758 IPR004082 -
Bva11g00510 799 Coils Coil 790 799 - -
Bva11g00510 799 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 5 799 IPR004082 -
Bva11g00510 799 MobiDBLite consensus disorder prediction 286 328 - -
Bva11g00510 799 MobiDBLite consensus disorder prediction 128 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00510 Bva-Chr11 8689315 8693469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00510 439 595 PHD Gene Family AT5G57380 25.478 1.31e-07 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00510 11 8689315 8693469 Bva11g00510 11 8689315 8693469 ECH