Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01678 ATGGATCCCACCAAGAAGCGTAAAATTGACGAAAACGGTGTTGTCCCTGTAGATTCCGATCTCAAACTTTTCCCTGCTGACGCGCGTAAAATTATCAAGCGCTTCAGCCCCGAGCAACTCATCGATATCCTCCAGGACGCTGTCATTCGCCACGCTGACGTCCTCGATGCCGTCCGGTCGATTGCAGATCCTGATGTCGCTCAGCGTAAGTTGTTTATTCGTGGGCTTGGGTGGGACACCACCACCGACGGCCTCCGTTCCCTTTTCTCAACCTACGGTGAACTTGAAGAAGCTGTCGTGATTACCGATAAGGCCACTGGTAAATCCAGGGGCTATGGATTTGTCACTTTTAAGCACGTTGATGGGGCTTTGCTTGCTCTCAAGGAGCCAAGCAAGAGGATAGATGGTCGTGTCACCGTTACCCAGCTTGCGGCAGCTGGAAATTCAGGTTCGAATACGAACGCGGTAGACATTGCGCTGAGGAAAATATACGTGGCAAATGTGCCGTCAGAGCTACCGGCCGATAAATTATTGGCTCACTTTTCACTGTATGGAGAGATTGAAGAAGGACCATTGGGGTTTGACAAGCAGACGGGTAAGTCAAAGGGCTTTGCTTTGTTTGTTTATAAGACATCGGAGGGAGCACAAGCAGCGGTTGTGGATCCGGTGAAGACTGTTGAGGGAAAGCAGCTGACTTGCAAATTGGCGATAGATGGGAAGCAAGGGAAACGAGGGGGTGGCCCAATGGGAGATGGAGTGCAGGGTCCTGGAAACTCTCATGGGGATCCAATAGGCATGGCTCCACCGTCTTCTATGCCAGGTTCATATGCTGGATCCGTTGGTCTAGGTTCCTATGGTGGACTTCAGGGTCAGCCACCTCTAGGTAGTCATCCTTTAAATTCATCGTTGGGTGGTCCGGGATTGTCCTCGGTTAATGCTCCATCTTCGCTAGGTGGTACTGGCGCATATGGTGGGCTTGGTGGTCCTTATGGCGGTTATGGTGGGACTGCGTCATCTGGTTTTGGTGGATTGGGCGGTAGTGGTGCATTGGGTGGCGCTGGTTTGTATAGATTGCCGACATCAGCTGGAATGCCTGCTGGTGGCTATCCAGAGAGTGGACATTACGGTTTATCATCGTCTGGGTACCCGAATCAGCATCACCACCCTACTAGAGCATCATCGGTACCAAGAGTTCCACCTGGTGGAATGTATCCAAATGTGCCCCCCTACTACTG 1235 0.5166 MDPTKKRKIDENGVVPVDSDLKLFPADARKIIKRFSPEQLIDILQDAVIRHADVLDAVRSIADPDVAQRKLFIRGLGWDTTTDGLRSLFSTYGELEEAVVITDKATGKSRGYGFVTFKHVDGALLALKEPSKRIDGRVTVTQLAAAGNSGSNTNAVDIALRKIYVANVPSELPADKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFVYKTSEGAQAAVVDPVKTVEGKQLTCKLAIDGKQGKRGGGPMGDGVQGPGNSHGDPIGMAPPSSMPGSYAGSVGLGSYGGLQGQPPLGSHPLNSSLGGPGLSSVNAPSSLGGTGAYGGLGGPYGGYGGTASSGFGGLGGSGALGGAGLYRLPTSAGMPAGGYPESGHYGLSSSGYPNQHHHPTRASSVPRVPPGGMYPNVPPYY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01678 411 CDD RRM_RBM24_RBM38_like 69 144 - -
Bva07g01678 411 SMART rrm1_1 70 142 IPR000504 GO:0003723
Bva07g01678 411 SMART rrm1_1 162 234 IPR000504 GO:0003723
Bva07g01678 411 MobiDBLite consensus disorder prediction 375 411 - -
Bva07g01678 411 SUPERFAMILY RNA-binding domain, RBD 154 261 IPR035979 GO:0003676
Bva07g01678 411 MobiDBLite consensus disorder prediction 239 268 - -
Bva07g01678 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Bva07g01678 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 220 IPR000504 GO:0003723
Bva07g01678 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Bva07g01678 411 Gene3D - 155 265 IPR012677 -
Bva07g01678 411 PANTHER GEO13361P1-RELATED 1 379 - -
Bva07g01678 411 MobiDBLite consensus disorder prediction 377 391 - -
Bva07g01678 411 MobiDBLite consensus disorder prediction 287 307 - -
Bva07g01678 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Bva07g01678 411 PANTHER UBP1-ASSOCIATED PROTEIN 2C 1 379 - -
Bva07g01678 411 CDD RRM_RBM24_RBM38_like 161 236 - -
Bva07g01678 411 Gene3D - 56 154 IPR012677 -
Bva07g01678 411 SUPERFAMILY RNA-binding domain, RBD 61 144 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01678 Bva-Chr7 15830534 15835293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01678 157 244 C2H2 Transcription Factor Family AT2G19380 37.778 2.77e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00916 09 4728050 4732560 Bva07g01678 07 15830534 15835293 ECH
Bva07g01678 07 15830534 15835293 Bva07g01678 07 15830534 15835293 ECH