Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01519 ATGGATGACATGAAAGATAAGGTCAAGGGTTTCATGAAGAAAGTCAGCCTGTCCTCATCATCTTCTGGTAAATTCAAGGGACAAGGTAGAGTGTTGGGATcggcttcatcttcatctggACCCAGTAACCCGATTCCAACACGAAGCTATCAGAACCTAAATTCGAAACCAGCTCCAACTACTGCATCGAACCCGAGGCCCTTGCCCCAGAAACCGATAGATTCTGAGCAGAATCGAACTGAGAGATCCAGTAAACCCAACTCGGATCAAAAACCCGAAAATGGGTTTGATCCATTTGACCCGTTGATCACTTCGTCGAAGAGATCTCAAAATGGGTATTCGTTGAATGTGTATGAATGCCCAATTTGTGGGCAATCGTTTAGGTCTGAAGAAGAGGTGTCTGTACACGTAGATAGTTGTGTTAGTAATGACGGTAGTGATGGAAATGCTGTATCAGAATTGGGTGATAATGGAGTTCAATCCAGGAGTGAATTAGAGGTTCATGTTGGGACGTATATTTCAGGGAAGCCATCTGAAGGATCAGTTGAGATTGTACTCAAATTGTTGAAGAACATTCTAAGAGAGCCGGAAAATGCAAAGTTTAGGAGGATTAGATTGAGTaatcaaaagataaaagaggCTGTTGGTGATGTTGCTGGAGGAGTTGAATTGCTGAGCTTTGTTGGTTTCGAACTTAGGGAGGAGGATGGGGAGACATGGGCAGTGATGGAAGTTCCTAAGGaggaacaaataaaattgatcaagAAAGCTGTAGTACTACTCGAAGCACAACCAGTACAAGAACctcaaaagaaagacaatttgGCATCTGAAACTTCTGCAGAGAAGATGGATGGACCGACTGAACCGAAGAAAGTTGACCGACAGgTGAAGGTCTTCTTTGCTGTCCCAGAAAGCATTGCAGCTAAAATTGAGCTACCAGATTCTTTCTATAGACTTACAGTTGACGAGGTGAGAAGAGAAGCTGAATTAAGGAGGAAAAAGATTGCAGACTCCCAGCTTTTGATCCCTAAGTCACTCAAAGAAAAGCAAGCAAAAGCTGCCAGAAGAAGATACAACAAAACTATGATTCGGGTTCAGTTTCCAGATGGAGTGGTGCTTCAAGGTGTATTTTTGCCATGGGAACCAACTACTGCTTTATATGAGTTTGTCAGCTCCGCATTGAAACAACCGGGTTTAGAATTTGAGTTAATGCATCCTGTACTAGTCCAACGGCGGGTGATCCCTCATTTTCCTAGAGAAGGAGAGAGAGCTAGAACACTAGAGGACGAGGACCTGGTACCTTCTGCTCTGATTAAGTTCAAACCCTTTGAGACAGATTCTCTTGTCTTCACAGGTCTCAGAAATGAATTGCTTGAAATCAGCGAACCacttgtaaataatta 1406 0.4075 MDDMKDKVKGFMKKVSLSSSSSGKFKGQGRVLGSASSSSGPSNPIPTRSYQNLNSKPAPTTASNPRPLPQKPIDSEQNRTERSSKPNSDQKPENGFDPFDPLITSSKRSQNGYSLNVYECPICGQSFRSEEEVSVHVDSCVSNDGSDGNAVSELGDNGVQSRSELEVHVGTYISGKPSEGSVEIVLKLLKNILREPENAKFRRIRLSNQKIKEAVGDVAGGVELLSFVGFELREEDGETWAVMEVPKEEQIKLIKKAVVLLEAQPVQEPQKKDNLASETSAEKMDGPTEPKKVDRQVKVFFAVPESIAAKIELPDSFYRLTVDEVRREAELRRKKIADSQLLIPKSLKEKQAKAARRRYNKTMIRVQFPDGVVLQGVFLPWEPTTALYEFVSSALKQPGLEFELMHPVLVQRRVIPHFPREGERARTLEDEDLVPSALIKFKPFETDSLVFTGLRNELLEISEPLVNN 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01519 468 Gene3D - 174 262 - -
Bva01g01519 468 MobiDBLite consensus disorder prediction 269 290 - -
Bva01g01519 468 Gene3D - 351 444 - -
Bva01g01519 468 MobiDBLite consensus disorder prediction 275 290 - -
Bva01g01519 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 148 IPR013087 -
Bva01g01519 468 Pfam UBX domain 358 407 IPR001012 GO:0005515
Bva01g01519 468 SMART PGNneu 180 247 - -
Bva01g01519 468 CDD UBX_UBXN6 362 442 - -
Bva01g01519 468 Gene3D Classic Zinc Finger 114 144 - -
Bva01g01519 468 ProSiteProfiles UBX domain profile. 357 441 IPR001012 GO:0005515
Bva01g01519 468 MobiDBLite consensus disorder prediction 14 74 - -
Bva01g01519 468 CDD PUB 173 263 - -
Bva01g01519 468 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 467 - -
Bva01g01519 468 SUPERFAMILY Ubiquitin-like 329 441 IPR029071 -
Bva01g01519 468 MobiDBLite consensus disorder prediction 1 108 - -
Bva01g01519 468 Pfam PUB domain 179 255 IPR018997 -
Bva01g01519 468 SUPERFAMILY PUG domain-like 178 262 IPR036339 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01519 Bva-Chr1 16688714 16693922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01519 1 389 C2H2 Transcription Factor Family AT2G01650 60.051 2.07e-157 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva01g01519 UBX 0.00012 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01519 01 16688714 16693922 Bva01g01519 01 16688714 16693922 ECH