Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01478 ATGGCTATGGcgaaggagaaagagagagaagaggaatTTCGCGGGAAAAGGCTGAAATGtgtaaagaaacaagaaaagggTCAAGCGGAGGAAGAAGCtggagaagaggaagaaagtaACGAGCTTCCTCTGGAGCCGGGGCTGTTCTTCTACCCAACAACACCGACTTCGTTCGTTGTCTCAGATGCCCTTGAACCAGATTTCCCCATCATCTATGTCAACAAGGTCTTTGAAACTTGCACTGGGTATCGCGCCGATGAGGTTCTGGGTCGCAACTGTCGGTTCTTACAGTTTAGGGACCCTCGTGCTCAAAGGCGGCACCCTTTGGTAGATCCTGTTGTTGTATCTGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTAGTAAGCAGGCTTAGACTTTCACCAATtcatgatgatgatggaaTTGTAACACATGTAATTGGTGTCCAGTTATTTTCTGAAGCAAATATAGATCTGAATAGCATCTCATATCCGGTTTTCAAAGAAACCTGCAGTCAGGATTTTGGTAAGACTGGTCAATATTCTCCCAAGAGTGGACAAACATTATACAGCCAATACCAAGAGATATGTGGCATTCTTCAGCTTTCTGATGAAGTCTTGGCTCACAATATATTATCACGGTTGACTCCTCGGGATGTTGCATCTATTGGGTCTGTATGCAGGAGAATTCATCAGTTAACAAAGAATGAACATGTTAGAAAGATGGTATGTCAAAATGCATGGGGAAAAGAAGTGACAGGTACCTTGGAAATGATGACCAAGAAGTTAGGATGGGGTCGTCTGACTAGGGAGCTAACTACCCTTGAGGCTGTTTGTTGGAGAAAACTAACTGTAGGAGGTGCAGTGGAACCGTCGCGGTGCAACTTCAGTGCATGTGCAGCAGGAAATCGACTGGTATTGTTTGGAGGCGAAGGAGTTGATATGCAACCTATGGATGATACTTTTGTTCTCAATCTCGATGCTCAAAATCCTGAGTGGCGTAGGTTTAGCGTGAAGTCATCACCGCCTGGAAGGTGGGGCCACACACTCTCATGCTTAAACAGTTCTTGGTTGGTGGTTTTTGGAGGATGTGGAAAGGAAGGATTGCTCAACGATGTCTTTGTTCTTGATTTGGATGCTCAACAGCCTACATGGAAGGAAGTCTGTGGTGGAACTCCGCCACTCCCTAGATCTTGGCACAGCTCCTGCACAATTGAAGGGTCTAAATTGGTGGTCTCAGGTGGATGCACAGATGCTGGAGTACTCCTCAGTGACACATACCTTCTAGACCTCACTAAAGATAATCCAACATGGAGAGAGATTCCAACTTCATGGGCTCCTCCTTCTCGGTTGGGACACTCGCTCTCAGTCTATGGCAGGACAAAAATACTCATGTTTGGTGGGCTTGCCAAGAGTGGACACTTGCGGCTACGGTCAGGTGAGGCTTACACCATTGATCTAGAAGATGAAGAGCCCCAGTGGAGACAGCTAGAATGCAGTGCATTTACCGGTGTTGGTGGTCAAAGTGCTGTGGTTCCTCCTCCAAGACTCGATCATGTTGCTGTCAGCATGCCATGTGGGAGGATTATTATCTTTGGAGGTTCCATTGCAGGCCTTCACTCTCCATCCCAGCTCTTTCTTTTGGATCCGGCCGAGGAGAAGCCATCGTGGAGGATCCTCAATGCACCAGGCCAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACAAGGGTCTTGGTGTTGGGTGGACATACCGGTGAGGAATGGATACTAAATGAGTTGCATGAGCTATGCTTAGCAAGTAGGCAGGACTCTGACCTGTA 1883 0.4509 MAMAKEKEREEEFRGKRLKCVKKQEKGQAEEEAGEEEESNELPLEPGLFFYPTTPTSFVVSDALEPDFPIIYVNKVFETCTGYRADEVLGRNCRFLQFRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVSRLRLSPIHDDDGIVTHVIGVQLFSEANIDLNSISYPVFKETCSQDFGKTGQYSPKSGQTLYSQYQEICGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIHQLTKNEHVRKMVCQNAWGKEVTGTLEMMTKKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAQNPEWRRFSVKSSPPGRWGHTLSCLNSSWLVVFGGCGKEGLLNDVFVLDLDAQQPTWKEVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTKDNPTWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEEPQWRQLECSAFTGVGGQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPAEEKPSWRILNAPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01478 627 SUPERFAMILY F-box domain 206 268 IPR036047 GO:0005515
Bva01g01478 627 Gene3D - 287 490 IPR015915 GO:0005515
Bva01g01478 627 ProSiteProfiles PAS repeat profile. 70 101 IPR000014 -
Bva01g01478 627 Pfam PAS domain 64 164 IPR000014 -
Bva01g01478 627 SUPERFAMILY PYP-like sensor domain (PAS domain) 65 165 IPR035965 -
Bva01g01478 627 TIGRFAM sensory_box: PAS domain S-box protein 69 164 IPR000014 -
Bva01g01478 627 Pfam Kelch motif 532 579 IPR011498 GO:0005515
Bva01g01478 627 Pfam F-box domain 214 251 IPR001810 GO:0005515
Bva01g01478 627 SUPERFAMILY Galactose oxidase, central domain 295 612 IPR011043 -
Bva01g01478 627 CDD PAS 54 164 IPR000014 -
Bva01g01478 627 Gene3D PAS domain 51 176 - -
Bva01g01478 627 Pfam Galactose oxidase, central domain 308 357 - -
Bva01g01478 627 Gene3D - 491 621 IPR015915 GO:0005515
Bva01g01478 627 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 3 624 - -
Bva01g01478 627 Pfam Galactose oxidase, central domain 422 473 - -
Bva01g01478 627 Pfam Galactose oxidase, central domain 373 420 - -
Bva01g01478 627 MobiDBLite consensus disorder prediction 22 41 - -
Bva01g01478 627 PANTHER ADAGIO PROTEIN 3 3 624 - -
Bva01g01478 627 Gene3D - 215 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01478 Bva-Chr1 16302077 16302358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01478 53 166 AGC Kinase Gene Family AT5G58140 43.860 1.09e-21 98.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01478 01 16302077 16302358 Bva01g01478 01 16302077 16302358 ECH