Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01449 ATGGTGAAACCGATCCAGAATGGGTTTGCTTCTGTGCCGCCTTTCCTGAAGAAATGCTATGAGATTGTCGACGACGAGTCCACGGACTCGATCATATCTTGGAGCCAAAGCAATAACAGTTTTGTTATCTGGGACATGACTGAATTTTCTGTCAATTTGCTTCCAAAATTTTTCAAGCACAACAATTTCTCCAGTTTCATCAGGCAACTCAATATCTATGGATTCCGGAAAATTGATACAGATCGCTGGGAATTTTCCAACGATGGATTTATCAGAGGTCAGAAGCATTTGTTGAAGAACATAGTTAGAAGAAAACATCCACATGCTGCAGATCAGAAAACAACAATGCAGCAGCAACAGAAGTGTGGTGAAAATCCACAAGAAGTTGCAAACCTTGGGCTCTGGAAAGAAGTTGAAAATCTCAAAGTTGATAAAAATGCACTTACACAGGAGCTAGTTAAGCTTGGGCAGCACCAGGAATCTTCAAAGAACCGGTTACTGCTTCTGGGGGATAAAATTGAAGGAATGGAAACAAGCCAGCAGCAGATGCTATCATTCTTAGTCATGGCGATGCAAAGCGGGATCTTGGTGAAGTTCCTTCAGTCTAAGGAACACAATTGGCGCATGGCAGAAGCAGGGAATATGTTAGAACAAGATGACAAACAAGTTCCCTCAGATGGGATGATAGTAAAGTATAAATCACCTATCCGTGAAAAGTTAAGGCCTATAGATACAGTTCCTGTTGTCTCAAATAGCCCAGAAGCAGAAGCTGATATCTCTGCAGCTGATGGATTGAAagatattttcatcaattctGACTTCTTAAAAGCACTTATGGATGAAAAATTATGTCAAGTGGAGCATCACTCTCCGTTTATTTTACCGGATGATGGTTCATGGGAACAGCTTCTTTTAGGTAGTCCTGTTCTTGATTCGAATCTGGAAAATGAGGAACCCACTAACAGTGAATTAATGGAGGTGGAAACTAGTGCTCTTGAAATTGCAAATGAGAAGTTTCCAGATTTTGAGTCACTTATTGCAGAAATGGAGAAGGAGTTGGAAGAACACGGTGATGGAGTTCATTCAGGGGAGGATCCAAATGGTaatgaaattcaaatgcaTTCCATTTA 1130 0.3991 MVKPIQNGFASVPPFLKKCYEIVDDESTDSIISWSQSNNSFVIWDMTEFSVNLLPKFFKHNNFSSFIRQLNIYGFRKIDTDRWEFSNDGFIRGQKHLLKNIVRRKHPHAADQKTTMQQQQKCGENPQEVANLGLWKEVENLKVDKNALTQELVKLGQHQESSKNRLLLLGDKIEGMETSQQQMLSFLVMAMQSGILVKFLQSKEHNWRMAEAGNMLEQDDKQVPSDGMIVKYKSPIREKLRPIDTVPVVSNSPEAEADISAADGLKDIFINSDFLKALMDEKLCQVEHHSPFILPDDGSWEQLLLGSPVLDSNLENEEPTNSELMEVETSALEIANEKFPDFESLIAEMEKELEEHGDGVHSGEDPNGNEIQMHSI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01449 376 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva01g01449 376 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 339 IPR027725 -
Bva01g01449 376 MobiDBLite consensus disorder prediction 355 376 - -
Bva01g01449 376 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva01g01449 376 Gene3D - 8 105 IPR036388 -
Bva01g01449 376 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 1 339 - -
Bva01g01449 376 Coils Coil 138 158 - -
Bva01g01449 376 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva01g01449 376 Coils Coil 332 352 - -
Bva01g01449 376 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva01g01449 376 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva01g01449 376 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva01g01449 376 SUPERFAMILY "Winged helix" DNA-binding domain 11 104 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01449 Bva-Chr1 16004025 16006988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01449 12 308 HSF AT1G67970 49.505 4.37e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bva01g01449 HSF_DNA-bind 1e-30 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01449 01 16004025 16006988 Bva01g01449 01 16004025 16006988 ECH