Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01411 ATGGGTCTGAAGATGCAGCAGAGCCACTGCCACCACCCTGTGGCTTTGAGGTTCCATGAGCAAATGGCGACCAAGAGAAAATACACTTTCATTCAGGCTCATAGAGCTTGGCTCCCAAAGTTTCTGCTGCTGTGGATCGTGCTGATGGCTTTGTTTGGCAGGTACATTTATGATCGCATGGATGCTGACAATAAAGTTAGGAGAAAAGAGGTTCTGGTTAGCCTATGTGAACAAAGGGCCAGAATGCTTCAAGATCAGTTCAGTGTTAGCGTTAACCATGTCCATGCCCTGGCCATCCTCGTTTCTACCTTCCATTATTATAGAAGCCCATCTGCAATTGATCAGGAAACATTTGCCGAGTATACAGCTAGAACAGCATTTGAGCGGCCATTACTGAATGGAGTGGCTTATGCACAGAGGGTGGTTAATTCAGATAGGGAAATTTTTGAGAGGCAACATGGATGGGTTATAAAGACAATGGAAAGAGAGCCTTCACCGGTTAGGGATGAGTATGCACCAGTAATATTTGCTCAAGAAACTCTCTCTTATCTGAAATCTATTGATATGATGTCTGGGGAGGAGGACAGAGAAAACATTTTAAGAGCTAGGGCCACCGGGAAAGCCGTTCTGACTTCCCCTTTCAGGCTGTTAGGTTCACACCATCTTGGAGTGGTGTTGACATTCCCCGTTTATAAATCTAAGCTCTCTCCAAAGCCAACAGTTGAAGAACGTGTTAAAGCAACTGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTTGTGGAGAATTTACTTGGTCAACTTGCTGGTAACCAAGCTATTTTGGTGCATGTGTTTGATGTCACAAACTCTACTGATGCCCTAATCATGTATGGAAATCCACATGAAGAGGGTGATAAGTCTCTTGAGCACAAAAGTAAGCTTGATTTTGGAGATCCCTACAGGAGACATCTGATGACTTGCAGGTATCATCAGAAGGCAGCAACATCATGGACAGCACTTACCACAACATTCCTATTTTTTGTGATTGGTTTATTAGTGGGTTACATTTTATATGGTGCTGCAATTCATATTGTCAAAGTTGAGGATGATTTCCATGAAATGCAGGAGTTAAAAGTCCGAGCAGAAGCAGCTGATGTTGCCAAATCCCAGTTTCTAGCTACTGTCTCCCATGAAATCAGAACACCCATGAATGGCATCCTAGGTATGCTTGCTTTGCTTCTAGATACAGAGTTGAGTTCAACCCAAAGAGATTATGCTCAGACTGCTCAAGCATGTGGGAAGGCACTGATAGCACTCATAAATGAAGTACTTGACCGAGCTAAAATTGAAGCTGGCAAGTTAGAGCTCGAAGCAGTTCCATTTGACATACGTTCCATACTTGACGATGTCCTTTCATTGTTTTCTGAGAAGTCTAGACACAAATGCCTTGAGCTGGCAGTTTTTGTCTCTGATAAAGTTCCAGATATTGTTATGGGGGATCCTGGGAGGTTTCgacaaataataacaaatctTGTTGGCAACTCCGTCAAATTCACCGAACGAGGACACATATTTGTTAAGGTCTATCTAGCTGAAAATACAAAGACAACAATGAATGGAAAATCTCAGACTTTTCTTAATGGAGGATCAGATGAAGTCGTGCATATGTCTGGTGGTTATCAGTACAAAACTCTGAGTGGATGTGAAGCAGCTGACGGGCGGAATAGCTGGGATAACTTACAGCATCTAATTGTGGatgaagaattttgttttgatgcttcaagtaaaaaagttacttatattgaaaattctgAGCAAGTAAATTTGGTTGTCTGTGTGGAGGACACTGGAATTGGGATTCCTTTATCTGCCCAGGACCGGATTTTCATGCCTTTCGTGCAGGCAGACAGCTCAACGTCACGAAATTATGGTGGAACTGGTATTGGTTTAAGCATCAGTAAGTGTTTGGTTGAACTAATGGGTGGTCAGATAAATTTCGTAAGCCGGCCCCAGGTTGGAAGCACATTTTCATTCACTGCAGTTTTCGGAACATTTAAGAAAAGTTTAGTTAGTGATGtgaaaaaacttaatttggaAGAGCTGCCTTCTGGTTTTAGAGGAATGAAAGCTGTGGTAGTTGATGGAAAACCTGTTAGAGCTGCTGTGACTATATACCATTTGAGGAGACTAGGGATAATGGTTAAAGTTACAAATAGCATCAATAAGACTGTTGCTTTATGTGGACAAAATGGTTCTCTCACATCTGGAATGTTCCAGCctgatattattttggttgagAAGGATTCATGGCTTTCCGGAGACAAAGCAGGCTTCAACATATCACAATTGGAATGGAAACAGAACGGGCATACATTGAAGTTGCCTAAAATGATTCTTCTTGCAACCAATATCAGTAATGCCGAATTCGATAAAGCAAACACTGCAGGTTTTGCTGACACTGTGATCATGAAACCTCTGAGGGCTAGTATGGTGGCTGCTTGTCTTCAGCAAGTTCTGGGGATGGGGAAGAAGAGGCAGCTAGGAAGGGACATGCCTAATGGTTCCACTTATCTACGAAGCCTTCTCTgcggaaagaaaattttggtagTTGATGATAATGCAGTAAACCGAAGGGTTGCTGCAGGTgcattgaagaagtttggagCTGATGTGAAGTGTGCTGAAAGTGGCAAAGCTGCACTTGAAATGCTTCAGTTGCCTCACGATTTTGATGCATGCTTCATGGACATTCAAATGCCCGAAATGGACGGGTTTGAAGCAACTCGCCGGATTCGGCAGATGGAGAGCAAGGTGAATGAGCAGCAGATGAATGGTGACACTGTTGAAGGAAATCCCAAGAAAGTTGAATGGCATGTGCCAATATTGGCCATGACAGCTGATGTAATTCATGCCACATATGATGAATGCCTGAAATGTGGAATGGATGGGTATGTCTCAAAGCCTTTTGAAGAAGAGAATCTCTATCAGGAAGTTGCAAAGTTCTTCAAATCCAAACCCATCTCAGACTCATG 3017 0.4113 MGLKMQQSHCHHPVALRFHEQMATKRKYTFIQAHRAWLPKFLLLWIVLMALFGRYIYDRMDADNKVRRKEVLVSLCEQRARMLQDQFSVSVNHVHALAILVSTFHYYRSPSAIDQETFAEYTARTAFERPLLNGVAYAQRVVNSDREIFERQHGWVIKTMEREPSPVRDEYAPVIFAQETLSYLKSIDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLSPKPTVEERVKATAGYVGGSFDVESLVENLLGQLAGNQAILVHVFDVTNSTDALIMYGNPHEEGDKSLEHKSKLDFGDPYRRHLMTCRYHQKAATSWTALTTTFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRHKCLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTERGHIFVKVYLAENTKTTMNGKSQTFLNGGSDEVVHMSGGYQYKTLSGCEAADGRNSWDNLQHLIVDEEFCFDASSKKVTYIENSEQVNLVVCVEDTGIGIPLSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFVSRPQVGSTFSFTAVFGTFKKSLVSDVKKLNLEELPSGFRGMKAVVVDGKPVRAAVTIYHLRRLGIMVKVTNSINKTVALCGQNGSLTSGMFQPDIILVEKDSWLSGDKAGFNISQLEWKQNGHTLKLPKMILLATNISNAEFDKANTAGFADTVIMKPLRASMVAACLQQVLGMGKKRQLGRDMPNGSTYLRSLLCGKKILVVDDNAVNRRVAAGALKKFGADVKCAESGKAALEMLQLPHDFDACFMDIQMPEMDGFEATRRIRQMESKVNEQQMNGDTVEGNPKKVEWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQEVAKFFKSKPISDS 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01411 1005 Pfam His Kinase A (phospho-acceptor) domain 382 447 IPR003661 GO:0000155|GO:0007165
Bva01g01411 1005 ProSiteProfiles Response regulatory domain profile. 861 997 IPR001789 GO:0000160
Bva01g01411 1005 PANTHER TWO-COMPONENT HISTIDINE KINASE 23 1001 - -
Bva01g01411 1005 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 368 448 IPR036097 GO:0000155|GO:0007165
Bva01g01411 1005 CDD HATPase_EvgS-ArcB-TorS-like 499 677 - -
Bva01g01411 1005 SMART CHASE_2 109 294 IPR006189 -
Bva01g01411 1005 SMART HKATPase_4 494 679 IPR003594 -
Bva01g01411 1005 Gene3D CHASE domain 113 328 IPR042240 -
Bva01g01411 1005 Gene3D - 358 445 - -
Bva01g01411 1005 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 436 674 IPR036890 -
Bva01g01411 1005 ProSiteProfiles Response regulatory domain profile. 704 834 IPR001789 GO:0000160
Bva01g01411 1005 Gene3D - 446 680 IPR036890 -
Bva01g01411 1005 SMART REC_2 860 993 IPR001789 GO:0000160
Bva01g01411 1005 Gene3D - 60 112 - -
Bva01g01411 1005 ProSiteProfiles Histidine kinase domain profile. 389 679 IPR005467 -
Bva01g01411 1005 SUPERFAMILY CheY-like 700 835 IPR011006 -
Bva01g01411 1005 SUPERFAMILY CheY-like 859 997 IPR011006 -
Bva01g01411 1005 CDD REC_hyHK_CKI1_RcsC-like 862 993 - -
Bva01g01411 1005 Gene3D - 855 1003 - -
Bva01g01411 1005 CDD HisKA 382 443 IPR003661 GO:0000155|GO:0007165
Bva01g01411 1005 SMART HisKA_10 382 447 IPR003661 GO:0000155|GO:0007165
Bva01g01411 1005 Pfam Response regulator receiver domain 862 993 IPR001789 GO:0000160
Bva01g01411 1005 ProSiteProfiles CHASE domain profile. 109 321 IPR006189 -
Bva01g01411 1005 PANTHER HISTIDINE KINASE 4 23 1001 - -
Bva01g01411 1005 Coils Coil 432 452 - -
Bva01g01411 1005 Pfam CHASE domain 112 292 IPR006189 -
Bva01g01411 1005 PRINTS Bacterial sensor protein C-terminal signature 604 618 IPR004358 GO:0016310|GO:0016772
Bva01g01411 1005 PRINTS Bacterial sensor protein C-terminal signature 622 632 IPR004358 GO:0016310|GO:0016772
Bva01g01411 1005 PRINTS Bacterial sensor protein C-terminal signature 639 657 IPR004358 GO:0016310|GO:0016772
Bva01g01411 1005 PRINTS Bacterial sensor protein C-terminal signature 663 676 IPR004358 GO:0016310|GO:0016772
Bva01g01411 1005 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 494 676 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01411 Bva-Chr1 15631600 15638945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01411 22 1005 Histidine Kinase Gene Family AT2G01830 71.357 0.0 1420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva01g01411 HATPase_c 1.3e-31 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01411 01 15631600 15638945 Bva01g01411 01 15631600 15638945 ECH