Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01401 ATGATTGGTGGGAAGGATCTTGACTCTGAGGGGGAGAACTCTCGGAGCAAGCTCTCGAAGCCCATTTCTGAGCTCGCCAAGGAAAACCCAGAAGCGAAAATGGGTTTTCCACAGGAAGGTATTGACTTTCTGAAGGGATCAGCTTTGGGTGTTGATGGGGTTCAATCAAAACCCGGAAAGGTTGGGAGCTCGGGCTTGCAAGAGCTGACTTTGAGCTACCTCTGTGATAACCCAAAGTTGGGTCTTCCTGATAAAGAGATTCCTGGGAAAAGCTTGTTGAATTCCTTGGAAAAAGTCAGCCACAAAGGTAAAGAAGTCATCATTTCTGAGAATTCAAATCAAGATGAGAAATGGGTAGAAAGGGATTTTCTAAGTCTGAGTGAGACTAGGGAGAATTCTTCAAAGCGATCCATGGTAGAAGATGGTGAAAGGGAAAACAGGGACAAAAAGCCTAAGCTTGAGACTCTTAATCTCTCTCTTGCTTTGCCTGATGTCTCACTTTCCCTCACAGCTTCAAACGCGCTTCAAAATGGTGATCAACCAGTGAAGCCGAAGCCGACCAGACCATCAATCCACACAACCACCTCATACTCAAATGATTATACTACAGGTTCTCTATCATACTCGTATTCTCACCCATTCTCCCACAACCCCAGCTGCTCCCTTACCCGTAATTCAACTGATTTTGACTATTCGGTCAGCAAAGATGATCAAATATGGAATTGTGGGGAGGGGACTAACGGGTCAGTTCATAGTAGGTTCAAGCCAATTGGAGACGGGGTTGCTTTGTCTAATCATGGTGGTGGGCTTAGTTCTTTTATGCAGAATAATAGTCAGTATAAAACTACAAGTTCAGATAAccattcttttttcccctcgGAATTGCCTGCTAGGCTAAGATTTGAGGCTCAGTCAGGGGACTCAAGAGGAAGGAATTCTGAGAATCTGAGAGGGATGGATGGTTTAGATGGTGGTGAGAAAGTGAGGAAAATTTCTAGACCAGAGAGAATTCTCAGAGAAATTGTGTCTGAGTCGATCCCTGCCATGGCCGTGATAATTCAGGAACTCACTGATGAAGCAATTGCATCAACTAAGGAGTACTTGAAAAATCTTATAGAATCTCTTGAGAAGAAAGAGGAATTGGGGAGCCTCCAAAAGCGGCTTGAGCGAAGATCTGACCTTACCAAAGAGACTCTTTCCAAGTGCCACAAAGTGCAATTGGAGATTTTACTTTCTATCAAGATGGGGCTCGGAAGCTACTTGTCTGGAAAACATGAATCTTCTGAGATGGTAGACATGTTCTTGTTTACAAAGTGTAGAAATGTAAACTGTAAGAGTGTGCTGCCTGTTGATGAATGTGACTGCAAGATTTGCTCTGGAAATAAAGGGTTTTGCAGCTCTTGCATGTGTCCTGTCTGCTTGAACTTTGATTGTGCGAGTAACACTTGCAGTTGGGTTGGTTGTGACGTTTGTTCCCACTGGTGCCATGCTGCCTGTGGCATTCAGAGGAATCTTATAAGACCTGGGCCTAGCTTGAAGGGGAATTCAGGGACCACAGAAGTGCAGTTTCATTGCATTGGTTGTGGACATGCTTCAGAGATGTATGGGTTTGTTAAAGATGTATTCATTTGTTGTGCAAAGGATTGGGGTCTAGAAAATCTGATGAAAGAACTTGACTGTGTAAGGAGGATTTTCAAGGGAAGCGAAGATCGGAAAGGGAGGGAATTGCATGTTAAAGCTGATGACATGGTGTTGAAGCTTCAAACTAAAACACTATCACCTTTGGATGCCTGCAATTTGATGATACAATTTTTCAACTATGCAGATAGCATATCAGACTTTCCTGCTTCTACCATAACTTCAATAGATTTTGCAGTGACGCAACCTAACCTTAGGAAGGATACAGCATCTCTTTCACAATCTAATTCTCTAATTCCAAATTATACTTATGACTCAAGCTATTCTAGATCACATCGCGATGTGCTGTCAAATGATCTTCATCAGAAAGATGTCAAATTCTCCATCCTAACTGAACTGAAAAGTGACAATGATTTCCAGTTGGGAGCTTTACTAAGGAAAGGTGGGCTTGAGAGCTTGGAGAGCATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTCCAAACCAAGGCAGATGAAGCGCGGAGAGAAGCAGAAGGGTTCCAGAAGATGATTAGGACTAAGACTGCACAAATGGAAGAAGAGTATGCTGAAAAGCTTTCCAAGCTGTGTTTGCATGAGATGGAAGAAAGGCGGCGGAAGAAATTGGAGGAACTGAAAGTCATGGAAAATTCCCATTGTGATTACCATAACATGAAGATGAGAATGCAAGCTGAGATTGCTGGTTTGTTGGAGAGAATGGAGGCAACAAAGCAGCAATGGGTTTA 2405 0.4274 MIGGKDLDSEGENSRSKLSKPISELAKENPEAKMGFPQEGIDFLKGSALGVDGVQSKPGKVGSSGLQELTLSYLCDNPKLGLPDKEIPGKSLLNSLEKVSHKGKEVIISENSNQDEKWVERDFLSLSETRENSSKRSMVEDGERENRDKKPKLETLNLSLALPDVSLSLTASNALQNGDQPVKPKPTRPSIHTTTSYSNDYTTGSLSYSYSHPFSHNPSCSLTRNSTDFDYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVALSNHGGGLSSFMQNNSQYKTTSSDNHSFFPSELPARLRFEAQSGDSRGRNSENLRGMDGLDGGEKVRKISRPERILREIVSESIPAMAVIIQELTDEAIASTKEYLKNLIESLEKKEELGSLQKRLERRSDLTKETLSKCHKVQLEILLSIKMGLGSYLSGKHESSEMVDMFLFTKCRNVNCKSVLPVDECDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWVGCDVCSHWCHAACGIQRNLIRPGPSLKGNSGTTEVQFHCIGCGHASEMYGFVKDVFICCAKDWGLENLMKELDCVRRIFKGSEDRKGRELHVKADDMVLKLQTKTLSPLDACNLMIQFFNYADSISDFPASTITSIDFAVTQPNLRKDTASLSQSNSLIPNYTYDSSYSRSHRDVLSNDLHQKDVKFSILTELKSDNDFQLGALLRKGGLESLESIVRIKEAEARMFQTKADEARREAEGFQKMIRTKTAQMEEEYAEKLSKLCLHEMEERRRKKLEELKVMENSHCDYHNMKMRMQAEIAGLLERMEATKQQWV 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01401 801 Pfam Coiled-coil region of Oberon 662 790 IPR032535 -
Bva01g01401 801 Coils Coil 703 737 - -
Bva01g01401 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 352 374 IPR004082 -
Bva01g01401 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 697 717 IPR004082 -
Bva01g01401 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 549 568 IPR004082 -
Bva01g01401 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 736 758 IPR004082 -
Bva01g01401 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 476 496 IPR004082 -
Bva01g01401 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 430 451 IPR004082 -
Bva01g01401 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 391 406 IPR004082 -
Bva01g01401 801 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 801 IPR004082 -
Bva01g01401 801 CDD PHD_OBE1_like 469 528 - -
Bva01g01401 801 Coils Coil 751 771 - -
Bva01g01401 801 Coils Coil 779 799 - -
Bva01g01401 801 Coils Coil 361 381 - -
Bva01g01401 801 MobiDBLite consensus disorder prediction 129 152 - -
Bva01g01401 801 MobiDBLite consensus disorder prediction 1 32 - -
Bva01g01401 801 MobiDBLite consensus disorder prediction 1 27 - -
Bva01g01401 801 Pfam PHD - plant homeodomain finger protein 439 563 IPR032881 -
Bva01g01401 801 PANTHER PROTEIN OBERON 3 1 801 - -
Bva01g01401 801 MobiDBLite consensus disorder prediction 174 198 - -
Bva01g01401 801 MobiDBLite consensus disorder prediction 303 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01401 Bva-Chr1 15335368 15340150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01401 439 588 PHD Gene Family AT5G57380 24.667 1.94e-07 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01401 01 15335368 15340150 Bva01g01401 01 15335368 15340150 ECH