Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01397 ATGGGAGGGTATTATTTTCTGGGATTTCTCTTGTTTTGCTCTCTGCTTTGTGTTCTTGCTTCTGGGTCATCAAGAAATTTGCCCATCATAGCTTTTGATGAAGGTTACACACCCTTGTTTGGAGACAACAATTTGGTCATCCACAGGGATGGAAAATCAGTTCATCTTACTCTGGATGAGAGAACAGGTTCTGGATTTGTCTCCCATGATATTTACCTTCATGGGTATTTCCGTGCTTCGATCAAGTTGCCTGCTGATTACACTGCTGGAGTTGTTGTTGCGTTTTATaTGTCAAATGGTGACATGTTCCAAAAGAACCATGATGAAATCGACTTTGAGTTTTTGGGAAACATTAGAGGCAAAGACTGGAGGATTCAGACCAATGTTTATGGTAATGGAAGCACTAGCATTGGCAGAGAAGAAAGATATGGTCTCTGGTTCGATCCAGCTGAGGATTTTCACCAGTACAGCATTCTCTGGACAGATTCTCAGATCATAttttatgtggatgatattcCTATTAGAGAAGTGAAGAGAACAGAAGCTATGGGAGGAGATTTCCCCTCAAAGCCAATGACTTTATATGCTACAATATGGGATGGATCTGATTGGGCCACCAATGGAGGAAAATATAGAGTGAATTACAAGTATGCACCCTATGTTGCTGAATTCTCCGATCTCATCTTGCACGGTTGCGCGGTTGATCCAATGGAGCACGCAGCTAAATGTGACAATGCTCAAGCTTCTGAAGCTGTTCCTTCTGGTGTCACACCAGTTCAAAGAATCAGAATGGAGAATTTCAGGAAGAAGCACATGACATACTCCTACTGCTACGACAAGCTCAGATACAAAGTCCCTCCATCCGAGTGCGTGATCAACCCCAAAGAAGCTGAAAGGCTCAGGAAATTTGACCCTGTCACATTTGGAAACGGCAGGCACAATGCAAAACGACACCGCCATCACAGCAAAGCAAGCCCAGCAGAGACTGCATCATTTTA 998 0.4269 MGGYYFLGFLLFCSLLCVLASGSSRNLPIIAFDEGYTPLFGDNNLVIHRDGKSVHLTLDERTGSGFVSHDIYLHGYFRASIKLPADYTAGVVVAFYMSNGDMFQKNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTSIGREERYGLWFDPAEDFHQYSILWTDSQIIFYVDDIPIREVKRTEAMGGDFPSKPMTLYATIWDGSDWATNGGKYRVNYKYAPYVAEFSDLILHGCAVDPMEHAAKCDNAQASEAVPSGVTPVQRIRMENFRKKHMTYSYCYDKLRYKVPPSECVINPKEAERLRKFDPVTFGNGRHNAKRHRHHSKASPAETASF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01397 332 Pfam Glycosyl hydrolases family 16 35 216 IPR000757 GO:0004553|GO:0005975
Bva01g01397 332 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 8 311 IPR044791 GO:0004553
Bva01g01397 332 PIRSF EndGlu_transf 4 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
Bva01g01397 332 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 294 IPR013320 -
Bva01g01397 332 Gene3D - 19 290 - -
Bva01g01397 332 MobiDBLite consensus disorder prediction 307 332 - -
Bva01g01397 332 CDD GH16_XET 30 290 IPR016455 GO:0010411|GO:0016762|GO:0042546
Bva01g01397 332 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 22 224 IPR000757 GO:0004553|GO:0005975
Bva01g01397 332 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 27-RELATED 8 311 - -
Bva01g01397 332 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 254 290 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01397 Bva-Chr1 15289645 15292486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01397 9 331 Glycoside Hydrolase AT1G14720 70.154 5.27e-176 489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01397 01 15289645 15292486 Bva01g01397 01 15289645 15292486 ECH