Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g02263 ATGGCCATGGATCCCACCAAGAAACGCAAGCTAGACGAGAACGGTTTTTCTGCCGCCCCCGCCGCACCAACCGATGGCGACAATCACCTCATGCTCACCCCTACGGACGCCCGCAAGATCATGGAGCGCTTCACCCCTGACCAACTCCTCGACATCCTCCAGGACGCCGCCGTCCGCCATGCGGACGTCCTGGCCGCCGTGCGCTCCGTCGCTGACCCCGATGTCTCCCAGCGTAAGCTCTTCATCCGCGGCCTAGGCTGGGACACCACCACCGACGGCCTCCGCAGCCTATTCTCCACTTACGGCGACCTCGAGGAGGCGGTCGTTATCCTCGACAAAGCCACTGGCAAGTCCAAGGGCTATGGCTTCGTCACCTTCCGACACGTCGATGGTGCACTCCTCGCTCTGCGCGAGCCTAGCAAGCGAATCGATGGCCGTGTAACCGTCACGCAGCTTGCCGCAGCAGGCAATTCAGGCGCCACCACTAACGCTGCTGACGTGGCACTGCGAAAGATCTATGTCGCGAACGTGCCGCCGGACCTCCCCGCGGACAAGCTGCTGGCGCACTTCTCGCACTACGGGGAGATCGAGGAAGGGCCGCTGGGGTTCGACAAGCAGACCGGAAAATCAAAGGGTTTTGCGCTTTTCGTGTATAAGACTCCTGAGGGGGCTCAAGCTGCTTTGATGGAGCCCGTGAAGACGGTGGATGGGAGGCAGTTAAATTGCAAGCTGGCAATTACGGATGGGAAGCAAGGGAAGCGAGGCGGGGCGGCGCCAGGAGGGGCTGATGGCGTTCAGGGTCATGGTCATGGCCACGGTCACGGGAATGCTCATGGTCATGGGGATGGGATGGGGATGGCTCCGGCTTCTGTGCCAGGAACGCTTTCGGGTCAATATGGCGGCCCAGTTGGCAATTTGGGTTCTTATGGAGCGTTTGCTGGTGGGCTTCAGGGTCAGCCTCCCATGGGGAGTCATCCGTTGAATTCTTCAGTTGGTGGGCTGGGCTCTGTTGGAAATCAGGCTCCCCCAGCGATGGGCGGGGCTGGAGGGTATGGGTCTGGTCTTGGAGGCCATTATGGTGGTTATGGTGTGCCTGGATCTGTAGGCTTCGGTGGAATGGGAGGTGGGGCTGCAGGTGGTGGTGCTGGTTTAGGAGGAGGCGGCGCAGGTGGTGCTGGCGCTGGTGGACTTGGTGCTGCTTTGGGTGGCGCTGCTTCAATGTATAGATTGCCGGGTTCAGGCGGAATGCCAGGTTCTGGGTATCCTGAGAGTGGACATTACAGTTTATCAGCTTCGTCCGGTTACCAGAATCAGCATCACCCGCCTGCTGGAGCCTCTCCTGTTCCTAGGGTTCCTCCTGGTTCTATGTATCCAAATGTTCCCCCTTACTACTGA 1395 0.6 MAMDPTKKRKLDENGFSAAPAAPTDGDNHLMLTPTDARKIMERFTPDQLLDILQDAAVRHADVLAAVRSVADPDVSQRKLFIRGLGWDTTTDGLRSLFSTYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGATTNAADVALRKIYVANVPPDLPADKLLAHFSHYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALMEPVKTVDGRQLNCKLAITDGKQGKRGGAAPGGADGVQGHGHGHGHGNAHGHGDGMGMAPASVPGTLSGQYGGPVGNLGSYGAFAGGLQGQPPMGSHPLNSSVGGLGSVGNQAPPAMGGAGGYGSGLGGHYGGYGVPGSVGFGGMGGGAAGGGAGLGGGGAGGAGAGGLGAALGGAASMYRLPGSGGMPGSGYPESGHYSLSASSGYQNQHHPPAGASPVPRVPPGSMYPNVPPYY 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g02263 464 MobiDBLite consensus disorder prediction 425 440 - -
Arst3g02263 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 251 IPR000504 GO:0003723
Arst3g02263 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 155 IPR000504 GO:0003723
Arst3g02263 464 FunFam UBP1-associated protein 2C isoform A 61 164 - -
Arst3g02263 464 MobiDBLite consensus disorder prediction 249 290 - -
Arst3g02263 464 Gene3D - 54 162 IPR012677 -
Arst3g02263 464 SMART rrm1_1 79 151 IPR000504 GO:0003723
Arst3g02263 464 SMART rrm1_1 171 243 IPR000504 GO:0003723
Arst3g02263 464 MobiDBLite consensus disorder prediction 419 454 - -
Arst3g02263 464 SUPERFAMILY RNA-binding domain, RBD 163 277 IPR035979 GO:0003676
Arst3g02263 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 240 IPR000504 GO:0003723
Arst3g02263 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 147 IPR000504 GO:0003723
Arst3g02263 464 SUPERFAMILY RNA-binding domain, RBD 70 154 IPR035979 GO:0003676
Arst3g02263 464 Gene3D - 163 285 IPR012677 -
Arst3g02263 464 MobiDBLite consensus disorder prediction 1 30 - -
Arst3g02263 464 PANTHER GEO13361P1-RELATED 61 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g02263 Arst-Chr3 28929396 28932674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g02263 166 259 C2H2 Transcription Factor Family AT2G19380 38.947 5.52e-11 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g02263 3 28929396 28932674 Arst3g02263 3 28929396 28932674 ECH