Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00952 ATGCTCAAGAAGTGTTCCTATGAAGTGACTACATGTTGTTTGGCGAGGCATGCTCTACACTTGCTTCGCGAAAGGAAAGACGGGTATGATATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGATTCAAACTTCTAGAGCATGTTGGACTTGAGATGGATCTTCCTGTGATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACACGGAGCATGCGATTATCTGCTTAAGCCTATAAGGATGAAGGAACTGCGAAACATATGGCAGCATGTCTTTAGGAAAAGGATACACGAGGCGAGAGAATTCGAGAGTTTTGAAGGTTTCGAGAGCATTCACCTGATGAGAAACGGATTGGAGCAATGCGATGATGGGAACCTGTTTGCCCTTGAAGACATGACCTCAACTAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAGAGAATTGATAGATCCATCATCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCACCAGAAGTTTGTTAAAGCAGTGAATCAAATTGGATTTGATAAAGTTGGTCCAAAGAAAATACTAGATCTCATGAATGTTCCTTGGCTGACTAGAGAAAATGTTGCAAGCCACTTGCAGAAGTATCGGCTTTACCTAAGCCGGCTTCAAAAAGAGAACGATCTGAAGTCGTCTTCCTCAATCGGAATGAACCCGGATTTAGCCGCAACAGATCTAGGGAGTTTTGTTGGAGTTCAGAACTCAGTGAGCAAGAAACAAAATGATGTTTCAATTGACAGCTGCAGTTATTCAGAAGGAGCACTGCAACTTCAGAACATGGAAACCAAAACTCATGAAGGTAGCAGTGATCCAAACGGAACTATTTCTCCGCCTGCCACTACAGAAAAAGGAAGAACTATGATCAGAAACTTTGTTTCCGAGAAAAAGATGAGAAAGAACCAACCTTTTGACTCTCTTGAGCCGGAAGGAAACCACACAGCAGTAATTGATTGCTCCATTCCAACACAATTCTCTTGGAATGAAGTTCCAGAAATTCAACTCAAAGATCACAAGCCACTTGTTCAGTTAGAGGGTAACTTAAGCCACAAGTTTCCAGTAACAGGTAAGAAGCACCAAATCCAAGTTGATCATCAATCACCATCAATTGGTTCGATTGGTTCTCCATCTTTGACAGGGGAGGAGGTCACGGCATGCATCAAAACAAAACCTTTGTGTGCAGATTACAAGTGTGAATACAAGAGTTCCGTGAGTTCGATAGGATCGGCAGTTGACAACAACACGTTCCCTATTGAACCAGGAAGCCTTATGATGAATGATCCATCAACAGCACCAATTTCAACTACAAATTCGGGATTGAAAACACAAGCATCTAACCTCAACAGCATTTCGGATATGGAATTTTGCCAGAGAAACCTACTTTTGGATGCAGTTTCGCTACCGTTGGACGATGATCTGCATTTTAATTGGCTACATGGGGAATGCTCTAACATCAACTTCAGCCTGCAGAACATAGGGTATTATGATCCAGGGCTTATTGCAGAAATTCCAACTCATTACTATGATTCAGCAGCAGATTATGCAGTCATAGATCAAGGTCTATTCATATCATGA 1632 0.4185 MLKKCSYEVTTCCLARHALHLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESFEGFESIHLMRNGLEQCDDGNLFALEDMTSTKKRKDADNKHDDRELIDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDLKSSSSIGMNPDLAATDLGSFVGVQNSVSKKQNDVSIDSCSYSEGALQLQNMETKTHEGSSDPNGTISPPATTEKGRTMIRNFVSEKKMRKNQPFDSLEPEGNHTAVIDCSIPTQFSWNEVPEIQLKDHKPLVQLEGNLSHKFPVTGKKHQIQVDHQSPSIGSIGSPSLTGEEVTACIKTKPLCADYKCEYKSSVSSIGSAVDNNTFPIEPGSLMMNDPSTAPISTTNSGLKTQASNLNSISDMEFCQRNLLLDAVSLPLDDDLHFNWLHGECSNINFSLQNIGYYDPGLIAEIPTHYYDSAADYAVIDQGLFIS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00952 543 SMART REC_2 1 95 IPR001789 GO:0000160
Arst10g00952 543 CDD REC_typeB_ARR-like 1 99 - -
Arst10g00952 543 SUPERFAMILY CheY-like 1 111 IPR011006 -
Arst10g00952 543 NCBIfam myb-like DNA-binding domain, SHAQKYF class 165 218 IPR006447 GO:0003677
Arst10g00952 543 Pfam Response regulator receiver domain 2 94 IPR001789 GO:0000160
Arst10g00952 543 Gene3D - 165 224 - -
Arst10g00952 543 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 284 IPR045279 GO:0009736
Arst10g00952 543 ProSiteProfiles Response regulatory domain profile. 1 99 IPR001789 GO:0000160
Arst10g00952 543 FunFam Two-component response regulator 161 224 - -
Arst10g00952 543 SUPERFAMILY Homeodomain-like 163 222 IPR009057 -
Arst10g00952 543 PIRSF RR_ARR_type-B 1 504 IPR017053 GO:0003677|GO:0003700|GO:0009736
Arst10g00952 543 Gene3D - 1 164 - -
Arst10g00952 543 Pfam Myb-like DNA-binding domain 167 217 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00952 Arst-Chr10 9074602 9077859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00952 18 236 Response Regulator Gene Family AT3G16857 54.959 1.69e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Arst10g00952 Response_reg 2.3e-17 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g00952 10 9074602 9077859 Arst10g00952 10 9074602 9077859 ECH
Arst10g00952 10 9074602 9077859 Arst3g05949 3 133088274 133090929 PCT