Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1200 ATGGGTCTTAGTTTGAAGATGCAGAGCCACCATCCTGTGGCTTTGAGGTTGCATGATCAAATGGGGTCTAAAAGGAAGTACACTTTCATTCAGGCCCATAGAGCTTGGTTGCCAAAGTTTTTGCTGCTGTGGATCCTGCTAATGGCTTTGATCAGTTGGTGCATCTATAGTAAAATGGATGATGATACTAAAGTCAGAAGAAAAGAGGTGTTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGTTGCAAGATCAGTTTAGTGTTAGTGTTAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGAAACCCTTCTGCCATTGACCAGGAAACCTTCGCTGAGTATACAGCCAGGACAGCATTTGAACGACCGCTACTGAGTGGTGTGGCTTATGCACAAAGAGTTGTTAACTCTGAGAGGGAGAGATTTGAGAAAGAACACGGATGGGTTATAAAGACAATGGAAAGAGAGTCTTCACTGGTCAGAGATGAGTATGCACCGGTGATATTCATGCAAGAAACTGTCTCCTACCTTATGGCTCTTGATATGATGTCTGGGGAGGAGGACCGAGAAAACATTTTAAGGGCTAGAGCCACTGGGAAAGCGGTTCTGACTAGCCCTTTCAGGTTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTCCCTGTGTACAAATCTAAGCTCCCTCCAAAGCCAACAGTGGAAGAACGCATTGAAGCAACTGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTTGTGGAGAATTTACTTGGGCAACTTGCTGGGAACCAAGCAATTTTGGTCAATGTGTATGATGTCACGAACTATACTAATCCCCTAATCATGTATGGCAACCAATATGAAGAAGGTGATACATCACTTGCCCATCAAAGCAAGCTTGATTTTGGAGATCCATACAGGAAACACCAGATGATATGCAGGTACCATCAAAAGGCACCAACAAATTGGATAGCTCTTACAACGGCGTTCCTATTCTTTGTGATTCTTCTATTAGTGGGTTACATTTTGTATGGTGCTGGAAATCATATTGTCAAAGTTGAAGACGATTTCCATGAAATGCAGGAATTAAAAGGCCTAGCAGAAGCAGCTGATGTTGCCAAATCCCAGTTTCTGGCTACAGTCTCGCATGAAATTCGAACACCCATGAATGGTATTTTAGGAATGCTTGCTATGCTTCTAGATACAGAGTTGAGTTCAACCCAACGAGATTATGCTCAGACTGCTCAAACATGTGGAAAGGCACTGATAACATTAATAAATGAGGTGCTGGACCGAGCTAAAATTGAAGCTGGCAAGTTAGAGTTGGAAGCTGTTCCGTTTGACCTTCGTTCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAGTCTAGAGAAAAAGGCTTGGAGCTGGCTGTGTTTGTTTCTGATAATGTTCCGGATATTGTCATGGGAGATCCAGGGAGATTCAGACAAATAATAACAAATCTTGTTGGCAACTCGGTTAAATTTACTGAACAAGGACACATATTTGTTAAAGTCCATCTAGCAGAAAATAGAAAGTCCATAATGAATGGACAACATGAGACTTTTTTAAATGGAGAATCAGATGAAGTTTTCCATTTATCTGGTGATTATCATTTCAAAACCTTGAGTGGATGTGAAGCAGCTGATGAACGGAACAGCTGGGATAATTTTAAGCATCTAATTGCTGATGAAGAATCTTGCCTGGATTCTTCAAGAGAAATGGTGGCCTCTTGTGAATCTTCTGAGCAAGTCTCCTTGAGGGTCTGCGTGGAGGACACTGGAATTGGAATTCCTTTCTCAGCACAGGATAGGATATTCATGCCTTTTGTGCAGGCTGATAGCTCAACCTCACGAAATTATGGGGGTACTGGTATAGGCTTGAGTATCAGTAAATGCCTGGTTGAACTAATGGGTGGCCAGATAAACTTCATAAGTCGACCCCAGGTTGGTAGCACGTTTTCGTTTACTGCAGTTTGTGGAACATCGAAGAAAAGATCAGCTAGTGACATGAAAAATTTGGAAGATCTTCCTTCCATTTTTAAAGGGCTGAAAGTCATTGTGGTTGATGGAAAACCTGTTAGAGCTGCTGTCACTCGATACCATTTAAAGAGATTAGGGATACTAGTTAAAGTTGCAAATAGTATCAGTAAAGCCATTACTTTATGTGGTAAAAGTGGTTCTTTGATGTCAGGAACATTCCAGCCTGATATTGTCATGGTTGAGAAGGACACATGGATATCTGGAGAGGATGGAAGTTTCAATGTATGGAAACAGAATGGTCATATGTTTAAGATGCCTAAAATGATCCTTATGGCAACCAATATTAGTAGTACTGAGTTTGACAAAGCTAAGGCCACAGGTTTCACTGATACTGTAATCATGAAGCCGCTGAGAGCTAGCATGGTGGCTGCTTGTCTTCAGCAAGTTTTGGGGATGGGGAAGAAGAGGCAGCTTGGGAAAGACATGCCTAATGGTTCTGCTTTTCTACATAGCCTTCTTTATGGAAAGAAAATCCTGGTGGTTGATGACAATAAGGTAAACCGGAGGGTAGCTGCAGGTGCACTTAAAAAGTTTGGAGCTGATGTGAAGTGTGCTGAAAGTGGCAAAGCCGCTCTTGAAATGCTTCAATTGCCTCATAATTTTGATGCTTGCTTCATGGACATTCAAATGCCAGAAATGGACGGATTTGAAGCCACTAGTCTAATTCGGATGATGGAGAGGAAGGCAAATGAGGAAATGAACAATGGCAGCAAGTGGCATGTGCCTATACTGGCCATGACAGCCGATGTGATCCATGCTACATATGATGAGTGCTTGAAATGTGGCATGGATGGATATGTCTCGAAGCCATTTGAGGAAAAGAATCTGTATCAAGAAGTAGCAAAGTTTTTCAAATCCAAGCCCATCTCAGACTCATGA 2970 0.4212 MGLSLKMQSHHPVALRLHDQMGSKRKYTFIQAHRAWLPKFLLLWILLMALISWCIYSKMDDDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERERFEKEHGWVIKTMERESSLVRDEYAPVIFMQETVSYLMALDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTVEERIEATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDVTNYTNPLIMYGNQYEEGDTSLAHQSKLDFGDPYRKHQMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHEMQELKGLAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQTCGKALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSREKGLELAVFVSDNVPDIVMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLAENRKSIMNGQHETFLNGESDEVFHLSGDYHFKTLSGCEAADERNSWDNFKHLIADEESCLDSSREMVASCESSEQVSLRVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTAVCGTSKKRSASDMKNLEDLPSIFKGLKVIVVDGKPVRAAVTRYHLKRLGILVKVANSISKAITLCGKSGSLMSGTFQPDIVMVEKDTWISGEDGSFNVWKQNGHMFKMPKMILMATNISSTEFDKAKATGFTDTVIMKPLRASMVAACLQQVLGMGKKRQLGKDMPNGSAFLHSLLYGKKILVVDDNKVNRRVAAGALKKFGADVKCAESGKAALEMLQLPHNFDACFMDIQMPEMDGFEATSLIRMMERKANEEMNNGSKWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEKNLYQEVAKFFKSKPISDS* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1200 989 PRINTS Bacterial sensor protein C-terminal signature 603 617 IPR004358 GO:0016310|GO:0016772
Apr7g1200 989 PRINTS Bacterial sensor protein C-terminal signature 621 631 IPR004358 GO:0016310|GO:0016772
Apr7g1200 989 PRINTS Bacterial sensor protein C-terminal signature 638 656 IPR004358 GO:0016310|GO:0016772
Apr7g1200 989 PRINTS Bacterial sensor protein C-terminal signature 662 675 IPR004358 GO:0016310|GO:0016772
Apr7g1200 989 Pfam Response regulator receiver domain 855 977 IPR001789 GO:0000160
Apr7g1200 989 ProSiteProfiles Response regulatory domain profile. 854 981 IPR001789 GO:0000160
Apr7g1200 989 Gene3D - 355 444 - -
Apr7g1200 989 Gene3D - 695 831 - -
Apr7g1200 989 Gene3D - 848 987 - -
Apr7g1200 989 CDD REC_hyHK_CKI1_RcsC-like 855 977 - -
Apr7g1200 989 ProSiteProfiles Response regulatory domain profile. 701 827 IPR001789 GO:0000160
Apr7g1200 989 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 447 IPR036097 GO:0000155|GO:0007165
Apr7g1200 989 PANTHER HISTIDINE KINASE 4 22 985 - -
Apr7g1200 989 CDD HisKA 381 442 IPR003661 GO:0000155|GO:0007165
Apr7g1200 989 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 493 674 IPR003594 -
Apr7g1200 989 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 435 673 IPR036890 -
Apr7g1200 989 SMART HKATPase_4 493 678 IPR003594 -
Apr7g1200 989 PANTHER TWO-COMPONENT HISTIDINE KINASE 22 985 - -
Apr7g1200 989 Gene3D - 445 681 IPR036890 -
Apr7g1200 989 SUPERFAMILY CheY-like 697 828 IPR011006 -
Apr7g1200 989 ProSiteProfiles CHASE domain profile. 108 320 IPR006189 -
Apr7g1200 989 Pfam CHASE domain 111 291 IPR006189 -
Apr7g1200 989 SUPERFAMILY CheY-like 852 981 IPR011006 -
Apr7g1200 989 SMART HisKA_10 381 446 IPR003661 GO:0000155|GO:0007165
Apr7g1200 989 SMART CHASE_2 108 293 IPR006189 -
Apr7g1200 989 CDD HATPase_EvgS-ArcB-TorS-like 498 674 - -
Apr7g1200 989 SMART REC_2 853 977 IPR001789 GO:0000160
Apr7g1200 989 Gene3D CHASE domain 112 327 IPR042240 -
Apr7g1200 989 Pfam His Kinase A (phospho-acceptor) domain 381 446 IPR003661 GO:0000155|GO:0007165
Apr7g1200 989 Gene3D - 59 111 - -
Apr7g1200 989 ProSiteProfiles Histidine kinase domain profile. 388 673 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1200 Apr-Chr7 18968847 18977746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1200 11 989 Histidine Kinase Gene Family AT2G01830 71.271 0.0 1404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr7g1200 HATPase_c 7.5e-31 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1200 7 18968847 18977746 Apr7g1200 7 18968847 18977746 ECH