Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1193 ATGATGACTCCAAACTTGAACCTGGAACCTGAAGATGATTCAGAAGTCCACAGCCAAGAAGGTTCCAATATATCCGTACAAGAAACATCATATGAGCATACCAAGGAAAGCACCACCACATCTTCTTGTCTTACAAAGGCTGATGTTGATCCAGGTTCGGTTTCCCTTGACTTGACCCTCAACTTCAATCTCAGTGATGAAGAGTTGAAGGGTCCAAGTGATACTAACAGAGAAGTGGGAGCTGAAGCTCATGCTTCAGCATCAGCAATTCCTAGAGTTTTCTCTTGTAATTATTGTAGGCGGAAATTCTTCAGCTCGCAGGCATTGGGTGGCCACCAGAATGCCCATAAAAGGGAGAGGACAATGGCAAAGCGCGCAATGCGAATGGGGATGTTTACCGAAAAATGCACAAGCCTAGCATCTTTACCTCTTCATGGCTCCACTTTTCGGTCTCTTGGACTTGAAGCTCATGCTGCAATGCACCAAGGACATATGTTGTCCTCTGTGAGGGCTCCTGATATGAGAGCTGCAGCAAGATTTGAGAAACACTATTTTGGAGCACCGATCTTCGTGGAAGATGATGAAGTTGGTCTATTTTGGCCAGGCAGTTTCCGGCAGATAGATGAAAGGAGTGGTGTTAATTTGGGGCATGAACATGCTCATAATCCAAATACTAGTTTTATAGCTACTGCACCTCCATCACAAACATCTACATCTCCTGATCTCACTCTGAGACTTTAA 741 0.4467 MMTPNLNLEPEDDSEVHSQEGSNISVQETSYEHTKESTTTSSCLTKADVDPGSVSLDLTLNFNLSDEELKGPSDTNREVGAEAHASASAIPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTEKCTSLASLPLHGSTFRSLGLEAHAAMHQGHMLSSVRAPDMRAAARFEKHYFGAPIFVEDDEVGLFWPGSFRQIDERSGVNLGHEHAHNPNTSFIATAPPSQTSTSPDLTLRL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1193 246 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Apr7g1193 246 MobiDBLite consensus disorder prediction 215 246 - -
Apr7g1193 246 MobiDBLite consensus disorder prediction 1 47 - -
Apr7g1193 246 PANTHER ZINC FINGER PROTEIN 3-RELATED 7 246 - -
Apr7g1193 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Apr7g1193 246 PANTHER ZINC FINGER PROTEIN JAGGED 7 246 IPR045320 GO:0003700
Apr7g1193 246 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Apr7g1193 246 Gene3D Classic Zinc Finger 74 141 - -
Apr7g1193 246 MobiDBLite consensus disorder prediction 218 246 - -
Apr7g1193 246 MobiDBLite consensus disorder prediction 19 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1193 Apr-Chr7 18870850 18876418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1193 92 246 C2H2 Transcription Factor Family AT1G66140 46.629 1.15e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr7g1193 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1193 7 18870850 18876418 Apr7g1193 7 18870850 18876418 ECH