Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1190 ATGGGACTGGGAGGGTGTCACATGGGTTTGCTCTTCTTTTCTTCTCTGCTTTTTCTTCTCTTGCCTTCTACTGGGTCACTCAGAAAAAACTTACCCATCATACCCTTTGAAGAAGGATACACACCCTTGTTTGGGGACAGTAATTTGCTCATTCATAAGGATGGAAAATCCGTTCATCTTTCACTCGATGAAAGAACAGGTTCTGGATTTGTGTCTCATGATCTTTACCTTCACGGCTATTTCAGCGCTTCCATTAAGTTGCCTGCTGATTACACTGCTGGTGTTGTGGTTGCGTTTTATATGTCCAATGGTGACATGTTCCAGAAAAATCATGATGAAATAGACTTTGAATTTTTGGGAAACATTAGAGGCAAAGATTGGAGGATTCAGACTAATGTTTATGGTAATGGAAGTACCAGCATTGGTAGAGAGGAAAGATATGGTCTCTGGTTTGATCCTACTGATGATTTCCATCAATACAGTATTCTATGGACAGATTCTAAGATCATATTTTATGTGGATGATGTTCCTATTAGAGAAGTGAAGAGAACAGAATCTATGGGAGGAGATTTCCCCTCAAAGCCAATGACTTTGTATGCCACCATATGGGATGCATCTGATTGGGCGACCAATGGAGGCAAATACAGAGTAAATTACAAGTATGCACCCTATGTTGCTGAGTTCTCTGACCTTGTCCTGCATGGTTGTGCAGTTGATCCTATTGAGCATGTGGCCAAATGTGACACTGCTCAAGGTTCTGAAGCAGTTCCTTCTGGTGTCACACCAGTACAAAGAACTAAAATGGACAACTTCAGGTTGAAGCACATGACATACTCTTACTGCTATGATACAGTGAGATACAAAGTCCCTCCACCAGAGTGTGTGATCAATGGCCAAGAAGCTGAAAGGCTGAGAAAGTTTGATCCCGTGACGTTCGGTAATGGCCGGCGCCACCATGTAAAGCGGCACCGCCGCAGTAAAGTAAGCCAGGAAGAGGCTGCTTCATTTTAA 1011 0.4283 MGLGGCHMGLLFFSSLLFLLLPSTGSLRKNLPIIPFEEGYTPLFGDSNLLIHKDGKSVHLSLDERTGSGFVSHDLYLHGYFSASIKLPADYTAGVVVAFYMSNGDMFQKNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTSIGREERYGLWFDPTDDFHQYSILWTDSKIIFYVDDVPIREVKRTESMGGDFPSKPMTLYATIWDASDWATNGGKYRVNYKYAPYVAEFSDLVLHGCAVDPIEHVAKCDTAQGSEAVPSGVTPVQRTKMDNFRLKHMTYSYCYDTVRYKVPPPECVINGQEAERLRKFDPVTFGNGRRHHVKRHRRSKVSQEEAASF* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1190 336 Pfam Glycosyl hydrolases family 16 38 220 IPR000757 GO:0004553|GO:0005975
Apr7g1190 336 PIRSF EndGlu_transf 6 299 IPR016455 GO:0010411|GO:0016762|GO:0042546
Apr7g1190 336 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 258 294 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Apr7g1190 336 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 27-RELATED 11 315 - -
Apr7g1190 336 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 26 228 IPR000757 GO:0004553|GO:0005975
Apr7g1190 336 Gene3D - 24 294 - -
Apr7g1190 336 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 11 315 IPR044791 GO:0004553
Apr7g1190 336 MobiDBLite consensus disorder prediction 314 336 - -
Apr7g1190 336 SUPERFAMILY Concanavalin A-like lectins/glucanases 36 297 IPR013320 -
Apr7g1190 336 CDD GH16_XET 34 294 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1190 Apr-Chr7 18840366 18843186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1190 10 333 Glycoside Hydrolase AT2G01850 68.902 2.11e-166 465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1190 7 18840366 18843186 Apr7g1190 7 18840366 18843186 ECH