Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0080 ATGCTTCCCTATCAATTTTCGAGAGGTCTCAGGGTACTTGCCGTTGACAATGACATCAACGTACTTGAAAGCATCAAGCAAATGGGTATGAGATACTGTTATTCAGTCACCGCATGCTCTAATTCATCACTTGCTTTGAATGTTGTGCGCGAAAGAAAAGGGTGTTTTGATATGATACTTGTTGATGTTCATATGCCAAATATGGATGGTTTTGAATTCTTGCAGCATGTTAGCCAAGAAATCGATGTTCATGTTATTATGATGTCTGTTGATGCTTCTAAAAGTGATGTCTTAAAGTCTATTGAACTTGGAGCTTGTGATTATTGGCTTAAACCTTTGTCGGAGGAACGGTTCAAGAATATGTGGCAGCATGTTGCTAGAAAATCTTGGAGGGAAAATAAACTACACATAACTCTTGGCAACTTAGACCAAAATAAGAGTAATTCAAAGGAAGGTGATGTTGATGAATTGAATAGTTGTTATCAACCTCCAACAAAGAAGCCTCGTCTAACATGGTCAAGAGAACTGCATCTAGAATTTGTCAAGGCTGTGATGCAACTTGGGCTTAATAAGGCCGTGCCAAGGAAAATTCTTGAAGTAATGAATGTCCCTGGTTTGACAAGAGAGAATGTTGCTAGTCATTTGCAGAAATATAGACTTAATTTGAAGAAAAATGATGGAGTGGTGCAGCAACAGAATGAAATGTTAATGCCAAACGCTGGAGAATCCATGTTATTTGGTGGAAGATTGGATTTCCCTCAAGCTTTGGAAGCTACAGGCATTGTTCCTTATGAAACAATGACATACCTTCCAGAGCAAGATCCCCTCATGCAATCGACCATACAATGTCCCAACAATTCCTATGCAGAACAAGCTATAACACATGCGCATCCTCTCACAAAATATCCTTCCAACAATTTTCCAAAGTCCATCGTACTTCCAAATGGTGGAGCATGGCCTTCATCAATCGATACATTGCAGCATCAACATCCACTAATTCGTCAACTAATTCATGCAATCGATGTTCAACCACCTTGCATGATGGATTTTGGGAGCCTTTGGTAG 1065 0.3953 MLPYQFSRGLRVLAVDNDINVLESIKQMGMRYCYSVTACSNSSLALNVVRERKGCFDMILVDVHMPNMDGFEFLQHVSQEIDVHVIMMSVDASKSDVLKSIELGACDYWLKPLSEERFKNMWQHVARKSWRENKLHITLGNLDQNKSNSKEGDVDELNSCYQPPTKKPRLTWSRELHLEFVKAVMQLGLNKAVPRKILEVMNVPGLTRENVASHLQKYRLNLKKNDGVVQQQNEMLMPNAGESMLFGGRLDFPQALEATGIVPYETMTYLPEQDPLMQSTIQCPNNSYAEQAITHAHPLTKYPSNNFPKSIVLPNGGAWPSSIDTLQHQHPLIRQLIHAIDVQPPCMMDFGSLW* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0080 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 166 223 IPR017930 -
Apr7g0080 354 Pfam Myb-like DNA-binding domain 170 219 IPR001005 -
Apr7g0080 354 Pfam Response regulator receiver domain 12 120 IPR001789 GO:0000160
Apr7g0080 354 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 265 IPR045279 GO:0009736
Apr7g0080 354 SUPERFAMILY CheY-like 8 142 IPR011006 -
Apr7g0080 354 CDD REC_typeB_ARR-like 12 126 - -
Apr7g0080 354 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 167 221 IPR006447 GO:0003677
Apr7g0080 354 Gene3D - 10 139 - -
Apr7g0080 354 Gene3D - 164 225 - -
Apr7g0080 354 SUPERFAMILY Homeodomain-like 165 224 IPR009057 -
Apr7g0080 354 SMART REC_2 10 122 IPR001789 GO:0000160
Apr7g0080 354 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 8 265 - -
Apr7g0080 354 ProSiteProfiles Response regulatory domain profile. 11 126 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0080 Apr-Chr7 3244839 3246423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0080 5 232 Response Regulator Gene Family AT2G25180 45.059 1.71e-57 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Apr7g0080 Response_reg 9.2e-19 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0080 7 3244839 3246423 Apr7g0080 7 3244839 3246423 ECH