Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0160 ATGGCCAACAGCAACCTCCCTCGAAGAATCATCAAGGAAACGCAGCGTTTGCTCAGTGAGCCAGCGCCTGGAATTAGTGCCTCCCCTTCAGAAGACAATATGCGATATTTCAACGTGATGATCCTTGGGCCGACACAGTCACCATATGAAGGAGGAGTTTTCAAGTTAGAACTATTCTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTTAGGTTTCTAACAAAAATATATCATCCAAACATTGATAAGCTTGGCAGGATATGTCTTGATATTCTGAAAGATAAGTGGAGTCCTGCCCTTCAGATACGCACTGTTCTATTGAGCATCCAAGCTCTTTTGAGTGCACCAAACCCAGATGATCCACTTTCTGAGAACATTGCCAAGCATTGGAAATCTAACGAAGCCGAGGCTGTTGAGACAGGTATCAGGAGATCATTTTAA 444 0.4392 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETGIRRSF* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0160 147 CDD UBCc 7 141 IPR000608 -
Apr5g0160 147 Gene3D Ubiquitin Conjugating Enzyme 1 145 IPR016135 -
Apr5g0160 147 SMART ubc_7 8 145 - -
Apr5g0160 147 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 139 - -
Apr5g0160 147 SUPERFAMILY UBC-like 7 137 IPR016135 -
Apr5g0160 147 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Apr5g0160 147 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 35 2 139 - -
Apr5g0160 147 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 147 IPR000608 -
Apr5g0160 147 Pfam Ubiquitin-conjugating enzyme 9 137 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0160 Apr-Chr5 1392112 1403759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0160 8 118 Miscellaneous Gene Families AT3G17000 29.060 7.98e-12 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0160 5 1392112 1403759 Apr5g0160 5 1392112 1403759 ECH
Apr2g0451 2 5232675 5237455 Apr5g0160 5 1392112 1403759 PCT