Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0159 ATGTCACGTTCTGATAAACCCATTCCCGAGTTAGGGCTCAGCGATCGCTTCCGTGACTCACTGAGTTGTTCTGAAGCGAACAAACCCGATTTCCGAGAACTCGATCTGGGTTCACCTGTTTCTCCATTGCGTGCTCGTCACCATAGTGCAGCCACTACCAGTAGTAGCAGCAGCAGTAGCGGTTCATCCGGGTCGGGTCGAGCCGGTAACAACCCGGTTTCTAAGAGATCCGATTCCGGCGAGCTCTCCGGCTCCAGTGATACTAACAGTCCCACCCGGACATCCAAACCGGGTCATCGGAGATCCGATTCGGGTCAGAGCCAGAGATCCCCTTCCTCCGCCGCTGTGAACTCGCCGCCGCTGAATGTTCTTCCTGCCGGGAACATTTGCCCTTCCGGCAGGGTTCTCAAGGCAGTGCCGGTAGCGGCTGTGTCAAGCCGGAGCTCCAGGACCGACATTTTGGGCTCCGGCACAGGGAATTACGGCCACGGAAGCATAATGCGGGGCGGCAGAGGTGGCGGGAGCAACACCAGTGAGGCAGCGAGGGTGAGGGTTAGCGGGGGTTGCGGCGATTTGATGAAGCGTGTGGATCCGGAAGAGGTGAAGAGAGCAGGAAATGAAGAGTATAAGAGAGGGCACTTTGCGGAGGCGCTGTGCCTTTATGATCGGGCAATTGCGCTGTCTCCGGGCAATGCTGCGTACCGCAGTAACCGTGCTGCCGCATTGATCGGTTTGGGACGGCTGCCGGAGGCGGTGAGGGCGTGTGAGGAGGCGGTAGAGTTGGATCGTACCTATGGAAGGGCGCATCAGCGTTTGGCGACTCTCTTTCTCAGGTTAGGAGTAGTTGAGAATGCTAGGAAGCACCTTTGTTATTCTGGGCTGAAGCCAGATCCTTGTGAGTTGCACAAGTTACAAATAGTGGAAAAGCATATTAGCAAATGTGTGGATGTACGGAGGATAAGAGATTGGAAGAGTGTACTTAGGGAAGCTGATGCTGCTGTTGCTACGGGAGTGGATTCTTGTGTTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTCTCAGGCTCCACCAGATGGATGATGCCGAATCAAGTTTATTACATATTCCCAAATGTGAGCCGCATCCTGTTTCCTTATCGCAGGCCAGATTTTTTGGGATGCTTTCTGAAGCTTATTGCTACTTTGTTAAAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGCAAGCTAGTCAGATTGACCCCCGAAACATTGAAGTTGCTGTTTTGCTCAACAATGTAAGGATGGTGGCTAGAGCTCGATTGCGTGGCAATGATCTCTTTAAATCAGAAAGGTTCACTGAAGCGTGCTTGGCATATGGAGAAGGTTTGAGGCTAGACCCTTCAAACTCTGTTCTCTATTGCAATAGAGCAGCATGTTTTTTTAAGCTTGGGCAATGGGAAAAATCAATTGAAGACTGCAATCAAGCTTTACTCATCCAACCAAACTACACAAAAGCCATTCTTCGGAAGGCTGCTTCAAATAGCAAGCTAGAAAGGTGGGCAGAAGCAGTAAACGATTACGAGCTCTTGCGGAGAGAACTACCAGATGACAATGAAGTTGCTGAAGCACTGTTTCATGCGCAAGTAGCATTAAAGAAGTCTCGTGGGGAAGAAGTACATAATTTAAAGTTTGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTTCATTTTGAAACCGCATCCAACTTGCAATGCAAGCAAATATCACCCTTTGTGGATACGCTGTGTAGTCGCCATCCATCTATAAATTTCCTCAAGGTGGATATTCAACAAAGCCCAACAGTCGCTACTGCTGAGAATGTGAGCATTGTACCGACATTCAAGATCTACAAAAATGGCTGTCGAGTGAAGGAAATTGTATGTCCTAGTCGTGAAATGTTGGAACACTCCGTTAGGCATTACAGCTTGTAG 2013 0.4943 MSRSDKPIPELGLSDRFRDSLSCSEANKPDFRELDLGSPVSPLRARHHSAATTSSSSSSSGSSGSGRAGNNPVSKRSDSGELSGSSDTNSPTRTSKPGHRRSDSGQSQRSPSSAAVNSPPLNVLPAGNICPSGRVLKAVPVAAVSSRSSRTDILGSGTGNYGHGSIMRGGRGGGSNTSEAARVRVSGGCGDLMKRVDPEEVKRAGNEEYKRGHFAEALCLYDRAIALSPGNAAYRSNRAAALIGLGRLPEAVRACEEAVELDRTYGRAHQRLATLFLRLGVVENARKHLCYSGLKPDPCELHKLQIVEKHISKCVDVRRIRDWKSVLREADAAVATGVDSCVQLFMCRAEALLRLHQMDDAESSLLHIPKCEPHPVSLSQARFFGMLSEAYCYFVKAQIEMAFGRFENAVTAAEQASQIDPRNIEVAVLLNNVRMVARARLRGNDLFKSERFTEACLAYGEGLRLDPSNSVLYCNRAACFFKLGQWEKSIEDCNQALLIQPNYTKAILRKAASNSKLERWAEAVNDYELLRRELPDDNEVAEALFHAQVALKKSRGEEVHNLKFGGEVEDISGLEQFRAAISLPGVSVVHFETASNLQCKQISPFVDTLCSRHPSINFLKVDIQQSPTVATAENVSIVPTFKIYKNGCRVKEIVCPSREMLEHSVRHYSL* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0159 670 Pfam Tetratricopeptide repeat 472 503 IPR001440 GO:0005515
Apr5g0159 670 SUPERFAMILY TPR-like 198 426 IPR011990 GO:0005515
Apr5g0159 670 SMART tpr_5 390 423 IPR019734 GO:0005515
Apr5g0159 670 SMART tpr_5 232 265 IPR019734 GO:0005515
Apr5g0159 670 SMART tpr_5 198 231 IPR019734 GO:0005515
Apr5g0159 670 SMART tpr_5 470 503 IPR019734 GO:0005515
Apr5g0159 670 SMART tpr_5 342 375 IPR019734 GO:0005515
Apr5g0159 670 SMART tpr_5 436 469 IPR019734 GO:0005515
Apr5g0159 670 SMART tpr_5 504 537 IPR019734 GO:0005515
Apr5g0159 670 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 10 668 - -
Apr5g0159 670 Gene3D Glutaredoxin 563 669 - -
Apr5g0159 670 MobiDBLite consensus disorder prediction 154 179 - -
Apr5g0159 670 ProSiteProfiles TPR repeat profile. 198 231 IPR019734 GO:0005515
Apr5g0159 670 Pfam Thioredoxin 577 659 IPR013766 -
Apr5g0159 670 Gene3D Tetratricopeptide repeat domain 196 556 IPR011990 GO:0005515
Apr5g0159 670 MobiDBLite consensus disorder prediction 104 119 - -
Apr5g0159 670 MobiDBLite consensus disorder prediction 1 122 - -
Apr5g0159 670 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 10 668 IPR044534 -
Apr5g0159 670 MobiDBLite consensus disorder prediction 47 93 - -
Apr5g0159 670 Pfam Tetratricopeptide repeat 392 423 IPR019734 GO:0005515
Apr5g0159 670 SUPERFAMILY Thioredoxin-like 473 668 IPR036249 -
Apr5g0159 670 Pfam Tetratricopeptide repeat 204 262 - -
Apr5g0159 670 CDD TRX_family 575 659 - -
Apr5g0159 670 ProSiteProfiles TPR repeat profile. 470 503 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0159 Apr-Chr5 1390410 1394172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0159 435 580 U-box Gene Family AT3G07370 29.508 1.03e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0159 5 1390410 1394172 Apr5g0159 5 1390410 1394172 ECH
Apr2g0450 2 5225954 5229863 Apr5g0159 5 1390410 1394172 PCT
Apr5g0159 5 1390410 1394172 Apr2g1863 2 24203262 24206105 PCT