Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0154 ATGGCGATGGATCCGACCAAGAAGCGCAAGCTCGACGAAAACGGCTTCGGCGCCGGCAGCGATTCCGACCCTTTAAAGCTCTCTCCCTCTGAAGCCCGCAAAATCATTGAGCGCTTCACCCCTGACCAGCTCCTCGACATCCTGCAAGACGCCGTAGTCCGCCACGCCGACGTCCTCTCCGCAGTGCGCACCGTCGCCGACCCCGACGTCTCCCAGCGCAAGCTATTCATCCGCGGCCTCGGCTGGGACACCACCACTGACGGCCTCCGCTCCCTCTTCTCCGCTTATGGGGACCTTGAAGAAGCCGTCGTCATCCTCGACAAGGCCACCGGGAAATCCAAGGGCTACGGCTTCGTCACCTTTCGCCACGTCGACGGTGCCCTCCTTGCGCTCCGTGAGCCAAGCAAGCGCATTGATGGGCGCGTGACAGTCACGCAGCTCGCCGCAGCGGGGAATTCCGCCTCCAACGCCAACGCCGCTGACATTGCGCTTCGCAAGATTTACGTTGCTAACGTGCCGCCGGACCTTCCCGCCGATAAGCTTCTCGCACACTTTTCAGTCTATGGCGAGATCGAGGAAGGGCCGTTAGGGTTTGACAAGCAGACAGGGAAATCGAAGGGTTTTGCGCTCTTTGTTTATAAAACCCCTGAGGGGGCGCAAGCTGCGCTGTTGGATCCTGTGAAGACAGTGGAGGGGAGACAATTGAGTTGCAAGCTTGCGATAACGGATGGGAAGCAAGGGAAGCGGGCTGGGCCGGAGGGGCCCCAGGCCCATGGGAATGTTCAGCATGGTCATCATGGTCATGGAGACGCGATGGGGATGCCTCCTGCTGCGGCTTCTGGACCAGGCTCGCTGTCAGGCCAGTATGGAGGCCCTGTTGGGCTGGGTTCTTATGGTGGGCTTCAGGGTCAGCCTCCGTTGGGTAATCATCCTTTGAATTCGTCAGTTGGTGGGCTGTCTAATCCAGCGCCGGGGACGATTGGCGGTGCAGGTGGGTATGGGGCTGGGATGGGTGGGCCTTATGGTGGGTATGGCGGGCCTGGGTCGACCGGTTTTGGAGGCCTGGGTGGTGGTGCTGGAGGTTTGGGAGGAGGCAGTGGTGGTGCTGGTGCTGGTGGGGGACTTGGGGGTGGTGGTGCTGGTTTGGGTGGTGGCGCTGGTTTTTTGTATAGGGGAATGCCTGCTGGTGGTGGAGGATATCCTGAGAGTGGACACTATAGTTTATCAACTTCTTCTGGGTACCAGAATCAGCATCACCCCCCTTCTGGGGCTTCGCCTGTCCCTAGGGTTCCACCTGGTTCGATGTATCCGAACGTTCCCCCTTACTACTGA 1332 0.5998 MAMDPTKKRKLDENGFGAGSDSDPLKLSPSEARKIIERFTPDQLLDILQDAVVRHADVLSAVRTVADPDVSQRKLFIRGLGWDTTTDGLRSLFSAYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSASNANAADIALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALLDPVKTVEGRQLSCKLAITDGKQGKRAGPEGPQAHGNVQHGHHGHGDAMGMPPAAASGPGSLSGQYGGPVGLGSYGGLQGQPPLGNHPLNSSVGGLSNPAPGTIGGAGGYGAGMGGPYGGYGGPGSTGFGGLGGGAGGLGGGSGGAGAGGGLGGGGAGLGGGAGFLYRGMPAGGGGYPESGHYSLSTSSGYQNQHHPPSGASPVPRVPPGSMYPNVPPYY* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0154 443 MobiDBLite consensus disorder prediction 1 25 - -
Apr5g0154 443 Gene3D - 154 274 IPR012677 -
Apr5g0154 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 224 IPR000504 GO:0003723
Apr5g0154 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 142 IPR000504 GO:0003723
Apr5g0154 443 MobiDBLite consensus disorder prediction 242 320 - -
Apr5g0154 443 MobiDBLite consensus disorder prediction 1 16 - -
Apr5g0154 443 MobiDBLite consensus disorder prediction 404 422 - -
Apr5g0154 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Apr5g0154 443 SUPERFAMILY RNA-binding domain, RBD 66 148 IPR035979 GO:0003676
Apr5g0154 443 SMART rrm1_1 74 146 IPR000504 GO:0003723
Apr5g0154 443 SMART rrm1_1 166 238 IPR000504 GO:0003723
Apr5g0154 443 SUPERFAMILY RNA-binding domain, RBD 154 269 IPR035979 GO:0003676
Apr5g0154 443 CDD RRM_RBM24_RBM38_like 73 147 - -
Apr5g0154 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 242 IPR000504 GO:0003723
Apr5g0154 443 PANTHER UBP1-ASSOCIATED PROTEIN 2C 3 378 - -
Apr5g0154 443 MobiDBLite consensus disorder prediction 401 443 - -
Apr5g0154 443 PANTHER GEO13361P1-RELATED 3 378 - -
Apr5g0154 443 Gene3D - 59 153 IPR012677 -
Apr5g0154 443 MobiDBLite consensus disorder prediction 424 443 - -
Apr5g0154 443 CDD RRM_RBM24_RBM38_like 165 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0154 Apr-Chr5 1348731 1353969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0154 161 255 C2H2 Transcription Factor Family AT2G19380 39.583 3.71e-11 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0154 5 1348731 1353969 Apr5g0154 5 1348731 1353969 ECH