Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0132 ATGCCTCCCAAGGATAGATCCAACCTTCTTGCTGGACCCAACCCGACCCATTTAACCAAAGAGATCCGTTACCGAGGAGTTAGAAAGAGACCGTGGGGCCGTTACGCCGCCGAGATCCGTGACCCGGGGAAGAAAACGCGCGTCTGGCTCGGAACATTTGACACCGCTGAGGAGGCTGCGCGTGCTTATGACGCCGCGGCGCGTGAGTTCCGTGGGGCAAAGGCCAAGACCAATTTTCCCACACAAGTGGAACTGACCAACAATAACTCCGCGCGTAGTCCTAGCCAGAGCAGCACCCTGGAGTCCTCCTCCCCGCCACCGCTGGACCTCACTCTCTCCCCGCTTGCAGGGGGCGCCGCGTTGGGGTTTCCGGTGGCTCGCCCTGTGGTGTTCTTCGATGCGTTTGCTCCGATGGAGATGCGCACGTTCGATCTGCCGGTGGCAGGGTTCCGCCGCAGCAGCGCCGATATTGGCGGAGCACAGAGCGACTCCGATTCGTCCTCAGTGGTGGATTATGAGCGGGTCCCACAACATCGGAGAATGTTGGATCTTGACCTTAATGTTCCTCCTCCTCCGGAGGTTGCCTGA 588 0.6003 MPPKDRSNLLAGPNPTHLTKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTQVELTNNNSARSPSQSSTLESSSPPPLDLTLSPLAGGAALGFPVARPVVFFDAFAPMEMRTFDLPVAGFRRSSADIGGAQSDSDSSSVVDYERVPQHRRMLDLDLNVPPPPEVA* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0132 195 PANTHER ERF FAMILY PROTEIN 1 181 - -
Apr5g0132 195 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Apr5g0132 195 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Apr5g0132 195 MobiDBLite consensus disorder prediction 78 111 - -
Apr5g0132 195 MobiDBLite consensus disorder prediction 79 109 - -
Apr5g0132 195 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 181 - -
Apr5g0132 195 Gene3D AP2/ERF domain 22 83 IPR036955 GO:0003700|GO:0006355
Apr5g0132 195 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Apr5g0132 195 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Apr5g0132 195 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Apr5g0132 195 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Apr5g0132 195 CDD AP2 23 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0132 Apr-Chr5 1177810 1179075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0132 14 133 AP2-EREBP Transcription Factor Family AT3G15210 64.029 2.24e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr5g0132 AP2 1.7e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0417 2 4924034 4925333 Apr5g0132 5 1177810 1179075 ECH
Apr3g1031 3 25052676 25053696 Apr5g0132 5 1177810 1179075 ECH
Apr5g0132 5 1177810 1179075 Apr1g1445 1 23805118 23807552 ECH
Apr5g0132 5 1177810 1179075 Apr3g1031 3 25052676 25053696 ECH
Apr5g0132 5 1177810 1179075 Apr5g0132 5 1177810 1179075 ECH