Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0053 ATGAACTTCAGGTGTAAATGTATTGCTTCTTTCATTCAGAAAATCACGTATGAAGCTTCAAGACACAGGCAACCGATGAAGAATCTTTCTTCGATGTTTGTCATTACTAAGATTCTGTTATTCATTTTTCATACCTGCAGGGCAATTGATTCCATATCCAAATTTGAGTCACTTTCTGAGAACACCACCTTGGTTTCCAAAGATGGTAGCTTTGAATTGGGTTTTTTCTGTCCTGGAAGTTCTGGGAACTGTTACTTGGGTATATGGTACAAGCGAATACCAGTTAAAACTGTGGTATGGGTGGCCAATAGAGCCAACCCAGTCAAAGACAACTCTAGCATTTTGCACATAAACAAGCAGGGGAATCTTGTGATTGTAACAGAAAATGGGACTGTTGTTTGGACAGGACTAGCAGACTCCAGAAACAAGGCTTTTAACCCATTTGTTCAGCTCTTAGACACTGGAAATTTAGTAATAAGAGATGAGAAAGATGAAGATGTAGAAAACTACTTATGGCAAAGCTTTGATTATCCTTCTGATACCTTGTTACCAGGTATGAAGCTGGGGTGGGACTTACAGACAGGTCTTAACCGGCATTTATCTGCTTGGAAGAACTGGGATGATCCATCACCGGGAGACTTTACTTTAGGTCTTGCACTTGAAGGGTACCCTCAAATAGTTATGTGGAAGGGCCCAACAGCATTCTATAGGGGTGGTCACTGGAATGGTATTACATTCAGTGGTGCCCCGGAATTGAAGGAAAATCCACTTTTTGAGTTCGAGTTTGTGTATAACAAGGAAGAGGTGTACTACACATACAGCCTCAGAAATGAGTCAATGATTTCAAGAATGGTTATGAACCAAACCGTGTATACTAGGCAGCGCTATGTATGGATTGAGGGAGCTCAAACTTGGAGGCTTTATGCTTCTGTGCCAAGAGACAACTGTGACTACTATAATCTTTGTGGCCCTAATGGAAATTGTGTTATAGGTGACTCACCAATTTGCCAGTGCTTGTCAGGGTTTAAGCCAAAATCACCGGAAAACTGGGATATGATGGACTGGACTCAAGGATGTGTGCACAATCAACAGTTGAGTTGCCAGGATAAGAGTAAAGATGGGTTTTTGAAATTTAGCGGTTTGAAATATCCTGATACTACACATGCTTGGGTCAATGAGAGTATGGATCTCAACAAATGCAGGGAAACTTGCTTAGGAAATTGTTCTTGTACAGCTTATGCAAACTTAGATATAAGAGGAGGAGGTACTGGCTGTGTGATTTGGTTTGGTGAGCTTAGGGACATGAGACAGTTTTCTGGTGAAGCTCGTGATCTATATATTCGGATGACAACATCAGAATTTGCTGAGAAAGATGTACATAAGAGGAAGGTGGCTGCAATAGTCATCAGTGTTGCCTCGGTTCTCGTGGTGATTCTGATTTTCTCCTACATTAGCAAGAGAATGAAAAAGCTCGAAGTTGAGGAAACAGAGAATTACTTGATGGAGAATAATGTTGAAAGCATGAAAGAAAACCTCGAGCTTACTTCGTTCGACCTTTCTCGTATTCTCAAAGCAACCAATGGCTTCTCAACAAACAAGAAGCTTGGCGAAGGCGGTTTTGGGACTGTATACAGGGGTATCCTAGAAGATGGACAAGAAATTGCTGTCAAGAGACTTTCACAGAGCTCTAGACAAGGATTGAATGAATTCATGAATGAAGTAATATTGATTGCCAAATTGCAGCATCGAAACTTAGTTAAGCTTCTTGGTTTTTGCGTTGAAGGAGAGGAGAAAATGCTTATTTATGAGTACATGTCTAACAATAGCCTAGACTCATTTATCTTTGATCATGTGAAAAGTAAAGTTTTAGATTGGTCTAAGCGCTTCAACATTATCTACGGAATTGCTCGGGGACTTCTGTATCTTCACGAAGATTCTAGATTAAAGATAATACACAGAGATCTTAAAGCGAGTAACGTCTTACTTGACAATGAGTTCAACCCAAAAATATCAGATTTTGGCATGGCTAGAACTATTGTCGGAGATCAAATTGAAGGAAACACGAACATGGTCGTTGGAACATATGGTTATATGGCACCTGAATATGCAATTAATGGACTATTCTCGGTAAAATCTGACATATTCAGCTTTGGTGTATTACTGCTTGAGATAGTATGTGGAAAGAAGAACAGAGAATTTTCCCATTCAGACAACTGTATAAACCTTATTGGACATGCATGGAGATTTTGGAAAGAAGAAAGGGCTTTAGAGCTGATTGATTCATGCTTCAAGAATTCATGTATTCAATCACAAGCACTACGCTGCATTCAAATTAGTCTTCTATGTGTTCAGAGGCATCCTGAGGATAGGCCCATAATGTCAACTGTGGTTTTGATGTTGATTACTGATATTGCATTACCCCAACCTAAGGAACCTGCTTTCCTTATTGACAACGTCTTAGTTGGTGCAGATTCTTACCATAACCATCAGCTTTCTACATCCAATGGAGTAAGCATCACCAAGTTAGAGCCTCGGTAG 2538 0.4003 MNFRCKCIASFIQKITYEASRHRQPMKNLSSMFVITKILLFIFHTCRAIDSISKFESLSENTTLVSKDGSFELGFFCPGSSGNCYLGIWYKRIPVKTVVWVANRANPVKDNSSILHINKQGNLVIVTENGTVVWTGLADSRNKAFNPFVQLLDTGNLVIRDEKDEDVENYLWQSFDYPSDTLLPGMKLGWDLQTGLNRHLSAWKNWDDPSPGDFTLGLALEGYPQIVMWKGPTAFYRGGHWNGITFSGAPELKENPLFEFEFVYNKEEVYYTYSLRNESMISRMVMNQTVYTRQRYVWIEGAQTWRLYASVPRDNCDYYNLCGPNGNCVIGDSPICQCLSGFKPKSPENWDMMDWTQGCVHNQQLSCQDKSKDGFLKFSGLKYPDTTHAWVNESMDLNKCRETCLGNCSCTAYANLDIRGGGTGCVIWFGELRDMRQFSGEARDLYIRMTTSEFAEKDVHKRKVAAIVISVASVLVVILIFSYISKRMKKLEVEETENYLMENNVESMKENLELTSFDLSRILKATNGFSTNKKLGEGGFGTVYRGILEDGQEIAVKRLSQSSRQGLNEFMNEVILIAKLQHRNLVKLLGFCVEGEEKMLIYEYMSNNSLDSFIFDHVKSKVLDWSKRFNIIYGIARGLLYLHEDSRLKIIHRDLKASNVLLDNEFNPKISDFGMARTIVGDQIEGNTNMVVGTYGYMAPEYAINGLFSVKSDIFSFGVLLLEIVCGKKNREFSHSDNCINLIGHAWRFWKEERALELIDSCFKNSCIQSQALRCIQISLLCVQRHPEDRPIMSTVVLMLITDIALPQPKEPAFLIDNVLVGADSYHNHQLSTSNGVSITKLEPR* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0053 845 Pfam D-mannose binding lectin 97 204 IPR001480 -
Apr5g0053 845 CDD B_lectin 56 178 IPR001480 -
Apr5g0053 845 Pfam S-locus glycoprotein domain 236 346 IPR000858 GO:0048544
Apr5g0053 845 ProSitePatterns Protein kinases ATP-binding region signature. 535 557 IPR017441 GO:0005524
Apr5g0053 845 SMART ntp_6 370 449 IPR003609 -
Apr5g0053 845 Gene3D - 45 175 IPR036426 -
Apr5g0053 845 ProSiteProfiles Bulb-type lectin domain profile. 49 172 IPR001480 -
Apr5g0053 845 Pfam Protein tyrosine and serine/threonine kinase 531 798 IPR001245 GO:0004672|GO:0006468
Apr5g0053 845 ProSiteProfiles PAN/Apple domain profile. 367 450 IPR003609 -
Apr5g0053 845 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 51 841 - -
Apr5g0053 845 ProSiteProfiles Protein kinase domain profile. 529 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0053 845 PIRSF SRK 22 845 IPR024171 GO:0004674
Apr5g0053 845 SUPERFAMILY Protein kinase-like (PK-like) 513 808 IPR011009 -
Apr5g0053 845 Pfam PAN-like domain 367 435 IPR003609 -
Apr5g0053 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
Apr5g0053 845 CDD PAN_AP_plant 363 448 - -
Apr5g0053 845 SMART blect_4 55 178 IPR001480 -
Apr5g0053 845 Gene3D Phosphorylase Kinase; domain 1 488 604 - -
Apr5g0053 845 Pfam Domain of unknown function (DUF3403) 803 845 IPR021820 GO:0004674
Apr5g0053 845 CDD STKc_IRAK 535 800 - -
Apr5g0053 845 Gene3D Transferase(Phosphotransferase) domain 1 605 806 - -
Apr5g0053 845 SMART serkin_6 529 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0053 845 ProSiteProfiles EGF-like domain profile. 312 348 IPR000742 -
Apr5g0053 845 PANTHER - 51 841 - -
Apr5g0053 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 98 209 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0053 Apr-Chr5 481591 485384 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0053 464 818 Receptor kinase-like Gene Family AT4G23230 52.381 8.14e-123 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr5g0053 PK_Tyr_Ser-Thr 3e-52 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0053 5 481591 485384 Apr5g0053 5 481591 485384 ECH