Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0050 ATGGCCACTCTTACCATTATCCTTATTGTTGCGAAGCTATGTTTTTGCTTTTCAGCTGCAACAGATACCATAACCCAGTTTCAATCACTTCTAAATAACATGACCCTTGTTTCCAAGGATGGAACCTTTGAATTGGGTCTCTTCAGCCCAGGTAGTTCCACAAACAGTTACATAGGAATCTGGTACAAAAGCGTTCCACTCAAAACTGTCGTTTGGGTTGCAAACGGTAACTACCCAACCAAAGACAACTCCAGCAAGTTGAGCATAAGCAGAGAGGGAAACCTCGTACTTCTCAGCCAGAACAACACCATTATTTGGTCAACAAACGCAACAACAAAAGTTGTCAATGTTGTAGCACAGCTATTAGACACAGGCAACTTTGTTCTAAGAGATGAGAAAGACAATAATCCTCAAAATTACTTGTGGCAGAGCTTTGATTATCCTTCAGATTCATTGTTACCTGGAATGAAATTAGGATGGGACTTCAAAACTGGTCGTAATCGACGCCTAATTGCTTGGAAAAATTGGGATGACCCATCTCCGGGGGATTTCATATGGGGTCTGGTGCCTACCAATAATCCTGAATCGGTTATGTGGAATGGCACAAAAGTGTTCTATAGAAGTGGTCCTTTTGATGGCATTCAATTTAGTGGTAACCCATCTTTGGATTATAATGCATTAGTCAATTATACATATGTGGCCAATAATGATGAATTGTGTTTTTCATATACTATCAATGATAAGTCATTAATTTCAAGAATTGTTATTAATCAATCAAGTCACGTTCGCCAGCGGGTGACATGGAGTAATAATACTGGAACGTGGAGGGTGTCTTCAACGTTGCCAATTGATTATTGTGACCATTATAATCTTTGTGGTCCATTTGGGATATGTTACGTTGGTGATTCCCCACTGTGCAAGTGTTTAAATGGCTTCAAGCCCAAATCGCAGCAAAATTGGATTGAAATGGATTGGAGTCAAGGATGTGTGCACAATGAAACATGGGTTTGTAGAGAAAAGAATAAGGATGGTTTTGTCAAATTTAGTAACGTAAAGACACCAGACACTACAAGATCGTGGGTTAATAAGAGTATGACACTAGAGGAATGTAAGGAAAAATGTTTGGAAAATTGTTCTTGTACGGCTTATGCAAATTCTGACATAAGGGGACAAGGTAGTGGTTGTGCTATTTGGTTTGGTGATTTGTTAGATATAAGGCAGATTTCAGATGCTGGGCAAGATTTATATGTTAGAACGGCGGTGTCTGAAATAGATAGTTCAATGCGAAAGGCGGTTCTGATCGCAAGCACTGTTTCATCTTTTGTTGTGATGCTTATAATTTCAACATTTATTTATTGGAGGAACAAAGGTAAAATCAAAGTTACAAAGAAAAAGAATGACGAAAACAAAGAAGATTTTGAGCTACCATTGCTTGACCTCACTTCAATAGAGCATGCCACAGACCACTTCTCAGATAGCAATAAGTTGGGCGAAGGTGGTTTTGGGCCTGTTTACAGGGGAATACTACAAGATGGGCAAGAAATTGCTGTGAAGAGGCTTTCCCAGACATCTGGACAAGGATTGAAAGAATTTAAAAATGAAGTTATTTTATGTGCTAAACTTCAACATCGAAATCTCGTTAAGGTTGTTGGTTGTTGCATTCAAGAAGATGAGAAACTACTCATATACGAATTCATGGCAAACAAAAGCTTGGACTTCTTTCTTTTTGATTCTAGTCAAAGTAAACTTTTGGACTGGTCCAAGCGCTTAAACATTATAAATGGAATAGCTCGGGGAATGCTTTATCTTCATCAAGATTCAAGATTGAGGATCATACATAGAGATCTCAAGGCAAGCAATATTTTATTAGACAATGAGTTGAACCCAAAAATTTCAGATTTTGGTTTGGCTCGAATGTGTGGGGGTGATCAAATTGAAGGGAATACAACAAGAGTAATTGGTACATATGGTTATATGGCACCTGAATATGCTTTTGATGGAATCTTTTCTCTCAAATCTGATGTATTTAGCTTTGGTGTATTATTGTTAGAGATAGTGAGTGGTAAGAAAAATGGCCGATTTTTCTATCCGAATCAGTACACTAATCTTATTGGCCATGCATGGAGCTTATGGAAAGAGGGCATTCCAACACAATTAATTGATGCTAATTTGCAAGATTCATATAATCTATCTGAAGCTTTGCGGTGCATTCATATTGCTCTCTTGTGCGTGCAACATCATCCTAATGATAGACCAAATATGGCATCTGTGGTTGTATTATTGAGCAATGAGAATATATTGCCTCCACCAAAGGATCCTACCTACTTAATAGACGAATTTTCAATTGGATGGAAGTCTTGTTCTACAACCCAAATGGCTTTTTCAATTAGTGAATCATTACCCCAACCTTAA 2412 0.3798 MATLTIILIVAKLCFCFSAATDTITQFQSLLNNMTLVSKDGTFELGLFSPGSSTNSYIGIWYKSVPLKTVVWVANGNYPTKDNSSKLSISREGNLVLLSQNNTIIWSTNATTKVVNVVAQLLDTGNFVLRDEKDNNPQNYLWQSFDYPSDSLLPGMKLGWDFKTGRNRRLIAWKNWDDPSPGDFIWGLVPTNNPESVMWNGTKVFYRSGPFDGIQFSGNPSLDYNALVNYTYVANNDELCFSYTINDKSLISRIVINQSSHVRQRVTWSNNTGTWRVSSTLPIDYCDHYNLCGPFGICYVGDSPLCKCLNGFKPKSQQNWIEMDWSQGCVHNETWVCREKNKDGFVKFSNVKTPDTTRSWVNKSMTLEECKEKCLENCSCTAYANSDIRGQGSGCAIWFGDLLDIRQISDAGQDLYVRTAVSEIDSSMRKAVLIASTVSSFVVMLIISTFIYWRNKGKIKVTKKKNDENKEDFELPLLDLTSIEHATDHFSDSNKLGEGGFGPVYRGILQDGQEIAVKRLSQTSGQGLKEFKNEVILCAKLQHRNLVKVVGCCIQEDEKLLIYEFMANKSLDFFLFDSSQSKLLDWSKRLNIINGIARGMLYLHQDSRLRIIHRDLKASNILLDNELNPKISDFGLARMCGGDQIEGNTTRVIGTYGYMAPEYAFDGIFSLKSDVFSFGVLLLEIVSGKKNGRFFYPNQYTNLIGHAWSLWKEGIPTQLIDANLQDSYNLSEALRCIHIALLCVQHHPNDRPNMASVVVLLSNENILPPPKDPTYLIDEFSIGWKSCSTTQMAFSISESLPQP* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0050 803 SMART blect_4 27 148 IPR001480 -
Apr5g0050 803 Gene3D - 16 145 IPR036426 -
Apr5g0050 803 Pfam D-mannose binding lectin 69 174 IPR001480 -
Apr5g0050 803 Gene3D Transferase(Phosphotransferase) domain 1 566 767 - -
Apr5g0050 803 Gene3D Phosphorylase Kinase; domain 1 453 565 - -
Apr5g0050 803 ProSiteProfiles Protein kinase domain profile. 490 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0050 803 Gene3D Hepatocyte Growth Factor 336 417 - -
Apr5g0050 803 Pfam S-locus glycoprotein domain 206 316 IPR000858 GO:0048544
Apr5g0050 803 Pfam PAN-like domain 337 405 IPR003609 -
Apr5g0050 803 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 179 IPR036426 -
Apr5g0050 803 SUPERFAMILY Protein kinase-like (PK-like) 473 773 IPR011009 -
Apr5g0050 803 ProSiteProfiles Bulb-type lectin domain profile. 21 142 IPR001480 -
Apr5g0050 803 CDD PAN_AP_plant 338 420 - -
Apr5g0050 803 SMART ntp_6 340 419 IPR003609 -
Apr5g0050 803 ProSiteProfiles PAN/Apple domain profile. 337 420 IPR003609 -
Apr5g0050 803 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 29 798 - -
Apr5g0050 803 CDD B_lectin 28 148 IPR001480 -
Apr5g0050 803 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 29 798 - -
Apr5g0050 803 Pfam Protein tyrosine and serine/threonine kinase 493 759 IPR001245 GO:0004672|GO:0006468
Apr5g0050 803 CDD STKc_IRAK 496 758 - -
Apr5g0050 803 SMART serkin_6 490 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0050 803 ProSiteProfiles EGF-like domain profile. 282 318 IPR000742 -
Apr5g0050 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Apr5g0050 803 PIRSF SRK 1 799 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0050 Apr-Chr5 468559 472334 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0050 454 801 Receptor kinase-like Gene Family AT4G11530 54.416 1.21e-124 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr5g0050 PK_Tyr_Ser-Thr 7.3e-49 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0050 5 468559 472334 Apr5g0050 5 468559 472334 ECH