Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0048 ATGGCCACCATTACTACTATGCTTGTTATTTCCAAACTAGTAGTAACATTTTTCTTCCCTCAAATTTCCTCTGCAGTCGACACCATTAACAACTTTCAACCACTTCATGATGGCACCACGTTGGTTTCTAACGATGAAACCTTCGAACTGGGTTTCTTCACTCCAGGTAGTTCCATAAACCGATACATTGGAATTTGGTACAAAAATATCCATGTCCCAACCGTTGTTTGGGTCGCCAACCGTGACAATCCAACTACCGACAACTCCAGCGTTTTGTGCATAAGCAAAGGCAACCTCGTACTTCTCAGCAAAAATAAAAGTCTTGTTTGGTCAGCAAACTTGTCAACAAAGGCGTTGAGTCTGAGTCCCTTTGTGCAACTCTTAAACACCGGAAATCTAGTACTTAAAGAGAAGAACAACGAAGAAGAAAGGGTCTTGTGGCAGAGTTTTGATTATCCAACAGATACACTATTACCTGAAATGAAGCTAGGATGGGACCTTAAAACTGGTCTCAATAGACGTTTAACTGCATGGAAAAACTGGGATGACCCATCTTCAGGGGATTTTTCTTGGGGAATTGTGCTTGGCAACAACCCTGAATCGGTAATGTGGAAGGGTTCTGTCGAATACTATAGAGGTGGCCCTTGGAATGGGGTTCAATTCAGTGGCTCACCGGCATTGAGGGCTAATCCAATTTTTGACTACAAATTTGTCAACAATTCAGATGAGGTGTACTACACGTACGACTTGAATAATAAGTCTGTAATTTCAATACTTGTTATGAATGGAACCCTTCATTTTCGCCAACGAATCACGTGGATTCCAAAATATGGAACTTGGAGTGTGTACCAGTCTGTGCCGAAAGATAACTGCGATGCTTATGGCCGATGTGGGCCTTATGGGAATTGCATTGTTGATGATTCACCTATTTGTCAGTGCTTGAAAGGGTTCAATCCAAAATCACCCCTGAATTGGGGTATGATGGATTGGTCACAAGGATGTGTGCGTAGTGAACCATGGAGCTGCAGGGTCAAGGATAAAGATGGTTTTATAAGATTGAGTGATATGAAATTGCCTAATACTACACAGTCTTGGGTCAATAAGAGTATGACACTAGAGGATTGCAAGGCCAAGTGTTGGGAAAATTGTTCTTGCACGGCTTATTCTAACTTAGATGTAAGTGGTGCAGGTAGTGGCTGTGTAATTTGGTTTGGTGATCTTGTTGATTTGAGATTGTTTTCAAATGGTGGGCAGGATCTATATATTCGAATGGCTACTTCAGAGATAGATGTGCGGCATAAGAAAAAGGTAGTTTTGGTAATTATAATTCCACTTGTAGCGGTTTTTATGATGCTATTGGCATTTTCCTACATTTGCCGGTCCAAAAGAAAGTGTAGAGAGAAAGCAAACAAAAGGTTGTCAACTAAAAAGAAAGATGAGACCACACAAGAAGATATTGAGCTTCCAATCTTTGATCTTGCAACAATAGCTAATGCCACTAATGACTTCTCAGTTGACAACAAACTTGGCGAAGGTGGCTTTGGACATGTATACAAGGGTACATTTGCAAATAGCCAAGAGATTGCTGTCAAAAGACTTTCGAGGAGCTCTGGACAAGGATCGAAAGAATTTAGAAATGAAGTTATATTGTGTACGAAGCTTCAGCATAGAAATCTTGTTGAGGTTATTGGTTGTTGCATTCAAGGAGAAGAGAAAATGTTACTTTATGAATACATGCCCAACAAAAGCCTAGACTCATTTTTATTCGACTCTACTCTGAGCAAACATCTAAATTGGTCTATACGTTTCAATATAATAAGGGGAATTGCTCGAGGACTACTTTATCTTCATCAAGATTCTAGATTGAGGATTATACATAGAGATCTTAAGGCAAGTAATATTTTATTAGACAATGAGATGAATCCAAAAATTTCGGATTTTGGTTTGGCTCGAATGTGTGGAGGTGATCAAATTGAAGGGAAAACGAGTAGAATAGTTGGCACATACGGTTACATGGCACCTGAATATGCTATTGATGGACTATTCTCTACCAAATCTGATGTATTTAGCTTTGGTATAATATTGTTGGAGATTGTAAGTGGAAAGAAAAACAATGGACTTGTCTTTACAAGTGACATGTATAATCTCATTGGGCATGCTTGGAGGCTGTGGAAAGATGAGACCCCAATGAAATTGATTGATGATTGTCTAGGAAGCTCATGCATTTTATCCGAAGCTTTTCGATGCATTCATATTGGTCTTTTATGTGTGCAACAACACCCTAACGATAGACCAAATATGGCATCTGTGGTTGTGATGTTGAACAGTAATGATGCTTTGCCTCAACCAAATAAACCTGGTTTCTTAATGGATAAAGTTAAAATTGAAGGAGAATCTTCTTCTAGCAGAATGATATTTTCTTCAACTAACGAAGTAACTATGTCAGTGTTGGATGCTAGATAA 2463 0.3914 MATITTMLVISKLVVTFFFPQISSAVDTINNFQPLHDGTTLVSNDETFELGFFTPGSSINRYIGIWYKNIHVPTVVWVANRDNPTTDNSSVLCISKGNLVLLSKNKSLVWSANLSTKALSLSPFVQLLNTGNLVLKEKNNEEERVLWQSFDYPTDTLLPEMKLGWDLKTGLNRRLTAWKNWDDPSSGDFSWGIVLGNNPESVMWKGSVEYYRGGPWNGVQFSGSPALRANPIFDYKFVNNSDEVYYTYDLNNKSVISILVMNGTLHFRQRITWIPKYGTWSVYQSVPKDNCDAYGRCGPYGNCIVDDSPICQCLKGFNPKSPLNWGMMDWSQGCVRSEPWSCRVKDKDGFIRLSDMKLPNTTQSWVNKSMTLEDCKAKCWENCSCTAYSNLDVSGAGSGCVIWFGDLVDLRLFSNGGQDLYIRMATSEIDVRHKKKVVLVIIIPLVAVFMMLLAFSYICRSKRKCREKANKRLSTKKKDETTQEDIELPIFDLATIANATNDFSVDNKLGEGGFGHVYKGTFANSQEIAVKRLSRSSGQGSKEFRNEVILCTKLQHRNLVEVIGCCIQGEEKMLLYEYMPNKSLDSFLFDSTLSKHLNWSIRFNIIRGIARGLLYLHQDSRLRIIHRDLKASNILLDNEMNPKISDFGLARMCGGDQIEGKTSRIVGTYGYMAPEYAIDGLFSTKSDVFSFGIILLEIVSGKKNNGLVFTSDMYNLIGHAWRLWKDETPMKLIDDCLGSSCILSEAFRCIHIGLLCVQQHPNDRPNMASVVVMLNSNDALPQPNKPGFLMDKVKIEGESSSSRMIFSSTNEVTMSVLDAR* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0048 820 Gene3D Transferase(Phosphotransferase) domain 1 579 785 - -
Apr5g0048 820 Gene3D - 21 150 IPR036426 -
Apr5g0048 820 Gene3D Phosphorylase Kinase; domain 1 462 578 - -
Apr5g0048 820 Pfam D-mannose binding lectin 74 179 IPR001480 -
Apr5g0048 820 CDD B_lectin 33 153 IPR001480 -
Apr5g0048 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Apr5g0048 820 CDD PAN_AP_plant 341 425 - -
Apr5g0048 820 Pfam Domain of unknown function (DUF3403) 778 820 IPR021820 GO:0004674
Apr5g0048 820 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 34 813 - -
Apr5g0048 820 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 34 813 - -
Apr5g0048 820 ProSiteProfiles EGF-like domain profile. 287 323 IPR000742 -
Apr5g0048 820 PIRSF SRK 1 820 IPR024171 GO:0004674
Apr5g0048 820 Pfam PAN-like domain 342 410 IPR003609 -
Apr5g0048 820 ProSiteProfiles PAN/Apple domain profile. 342 425 IPR003609 -
Apr5g0048 820 ProSiteProfiles Protein kinase domain profile. 503 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0048 820 Pfam S-locus glycoprotein domain 211 321 IPR000858 GO:0048544
Apr5g0048 820 SMART ntp_6 345 424 IPR003609 -
Apr5g0048 820 SMART serkin_6 503 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0048 820 ProSitePatterns Protein kinases ATP-binding region signature. 509 531 IPR017441 GO:0005524
Apr5g0048 820 SMART blect_4 32 153 IPR001480 -
Apr5g0048 820 CDD STKc_IRAK 509 775 - -
Apr5g0048 820 Pfam Protein tyrosine and serine/threonine kinase 505 770 IPR001245 GO:0004672|GO:0006468
Apr5g0048 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 184 IPR036426 -
Apr5g0048 820 ProSiteProfiles Bulb-type lectin domain profile. 26 148 IPR001480 -
Apr5g0048 820 Gene3D Hepatocyte Growth Factor 341 421 - -
Apr5g0048 820 SUPERFAMILY Protein kinase-like (PK-like) 484 774 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0048 Apr-Chr5 453213 457765 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0048 438 788 Receptor kinase-like Gene Family AT4G23230 55.682 6.29e-129 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr5g0048 PK_Tyr_Ser-Thr 3.1e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0048 5 453213 457765 Apr5g0048 5 453213 457765 ECH