LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr3g1031	ATGGTGGCTAAGGAGAAGAACCCAACCGTGAAGAACAAGAAACCCAACAATGCCAACGAAGTTCACTACAGAGGGGTGCGCAAGAGACCATGGGGCCGCTACGCCGCCGAAATAAGAGACCCTACTAAGAAGAGCCGCGTCTGGCTCGGCACCTTCGACACAGCCGAAGAAGCCGCCAAAGCCTACGACACCGCCGCGCGCCAGTTTCGCGGCCCCAAAGCCAAGACCAACTTCCCCTCTAATTCTCACCCCTCCAGCAACAACAACAACACCGTTATCCGCGACAGCCCCAGCCAGAGCAGCACCGTCGACTCAGCCACCCCGGAGCGTGAACCCACGCGCCCTCGCGAACTTGCCGCCGCCGTCATGGACCGCTTCCCCTTCCTCCCTCTCCAGCCCCAGCTCCTTGCTTTCCACGGCGCCGACCCCGTTCCGCTTCGCCCGGTTTTCTTTCTTGATCAGACCGGTCGGACCGAGTTTCTGGCTCAGCGCTTCCCTGTCCGGTTCGAACCGGGTCCGATCGAGTTCAACGGCGCGGTTCAGAGCGATTCCGATTCGTCCTCCGTTGTTGATTGTCAACCCAAAAGAGAACTCAATCTTGATCTTAACCTAGCTCCACCCATGGATGCTTAA	633	0.5908	MVAKEKNPTVKNKKPNNANEVHYRGVRKRPWGRYAAEIRDPTKKSRVWLGTFDTAEEAAKAYDTAARQFRGPKAKTNFPSNSHPSSNNNNTVIRDSPSQSSTVDSATPEREPTRPRELAAAVMDRFPFLPLQPQLLAFHGADPVPLRPVFFLDQTGRTEFLAQRFPVRFEPGPIEFNGAVQSDSDSSSVVDCQPKRELNLDLNLAPPMDA*	211

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr3g1031	210	Gene3D	AP2/ERF domain	21	81	IPR036955	GO:0003700\|GO:0006355
	Apr3g1031	210	MobiDBLite	consensus disorder prediction	63	115	-	-
	Apr3g1031	210	PRINTS	Ethylene responsive element binding protein signature	23	34	IPR001471	GO:0003700\|GO:0006355
	Apr3g1031	210	PRINTS	Ethylene responsive element binding protein signature	45	61	IPR001471	GO:0003700\|GO:0006355
	Apr3g1031	210	ProSiteProfiles	AP2/ERF domain profile.	22	79	IPR001471	GO:0003700\|GO:0006355
	Apr3g1031	210	MobiDBLite	consensus disorder prediction	1	27	-	-
	Apr3g1031	210	MobiDBLite	consensus disorder prediction	74	108	-	-
	Apr3g1031	210	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	8	197	-	-
	Apr3g1031	210	SMART	rav1_2	22	85	IPR001471	GO:0003700\|GO:0006355
	Apr3g1031	210	SUPERFAMILY	DNA-binding domain	22	80	IPR016177	GO:0003677
	Apr3g1031	210	CDD	AP2	22	78	IPR001471	GO:0003700\|GO:0006355
	Apr3g1031	210	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4	8	197	-	-
	Apr3g1031	210	Pfam	AP2 domain	22	71	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr3g1031	Apr-Chr3	25052676	25053696	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr3g1031	20	208	AP2-EREBP Transcription Factor Family	AT5G44210	49.741	1.94e-47	153

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Apr3g1031		AP2	1.1e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr3g1031	3	25052676	25053696	Apr3g1031	3	25052676	25053696	ECH
	Apr3g1031	3	25052676	25053696	Apr2g0417	2	4924034	4925333	ECH
	Apr3g1031	3	25052676	25053696	Apr5g0132	5	1177810	1179075	ECH
	Apr1g1445	1	23805118	23807552	Apr3g1031	3	25052676	25053696	ECH
	Apr2g0417	2	4924034	4925333	Apr3g1031	3	25052676	25053696	ECH
	Apr5g0132	5	1177810	1179075	Apr3g1031	3	25052676	25053696	ECH
	Apr3g1031	3	25052676	25053696	Apr1g1445	1	23805118	23807552	ECH