Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1527 ATGGGTCTTGGTTTGAAGATGCAGAGCCACAGTCACCACCCTGTGGCTTTGAGATTGCATGAGCAAGCGGGGAGCAAACGAAAGTACACTTTCATTCAGGCACATAGAGCATGGCTTCCCAAGTTCTTGATGATGTGGATCCTTCTGATGGCTCTAATTGGTTGCTGCATTTATAGTAAAATGGATGCTGACACTAAAGTGAGAAGAAAAGAGGTGTTGGGTAGCCTCTGTGATCAACGGGCAAGAATGCTGCAAGATCAATTCAGTGTTAGTGTCAACCATGTCCATGCCCTTGCCATTCTTGTTTCAACCTTCCATTACTTCAGAAGCCCTTCTGCCATTGACCAGGAAACCTTTGCTGAGTATACAGCCAGGACTGCATTTGAACGGCCATTACTTAGTGGTGTGGCCTATGCACAAAGAGTGGTTAACTCAGAGAGAGAAACATTCGAGAAGCTACATGGATGGGGTATCAAGACAATGGGAAGGGAACCTTCACAGGTTAGAGATGAGTATGCACCAGTGATATTTGCACAAGAAACTGTCTCTTACCTTGAATCTCTTGATATGATGTCTGGAGAGGAGGACCGAGAGAACATTTTGAGGGCTAGGGCCACTGGGAAAGCTGTTTTGACTAGCCCTTTTAGGCTGCTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTTCCAGTTTATAAATCTAAGCTCCCTCCAAAGCCAAGTATGGAAGAGCGCATTAAAGCAACAGCAGGATATGTTGGAGGATCCTTTGATGTCGAGTCCCTCGTGGAAAATTTACTGGGTCAACTTGCTGGTAACCAAGCTATATTGGTTAATGTATATGATGTCACAAACTCTACTGACCCCTTAATCATGTATGGCAACCAAAATGAAGAAGGCGATATGTCTCTTGTCCATGAAAGTAAGCTTAATTTTGGAGATCCATACAGAAAACATCAGATGATATGTAGGTATCACCAGAAGGCACCGACAAATTGGATAGCACTTACTACGGCATTCCTATTCTTTGTGATTCTCTTATTAGTGGGTTATATTTTATATGGTGCTGGAAATCATATTGTCAAAGTAGAGGATGATTTCCATAAAATGGAGGAATTGAAAGTCAGAGCAGAAGCAGCTGATGTTGCCAAGTCACAGTTTCTAGCTACCGTTTCTCATGAAATTAGAACACCCATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTAAGCACAGAATTGAGTTCAACTCAACGAGATTATGCTCAGACTGCTCAAGCATGTGGGAAGGCTCTCATAGCATTAATAAATGAGGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAGTTAGAGCTGGAAGCAGTTCCATTTGACATTCGTTCCATACTTGATGATGTCCTTTCTCTATTTTCTGAGAAATCTAGGAACAAAGGTTTGGAGCTGGCAGTGTTCGTTTCTGATAAAGTTCCAGATATTGTTAAGGGAGATCCTGGGAGATTCAGGCAAATTGTAACAAATCTTGTTGGCAACTCTGTTAAATTCACGGAGCGAGGACATATATTTGTGAAAGTCCATGTAGCTGAAAATAGAATGTCCACGATGAATGGAAAAATTGAGACTTTTGTAAATGGAGGATCAGATGAAGTTGTGCACATGTCTGGTGGTTATAATTTCAAAACTTTAAGTGGATATGAAGCAGCTGATGAGCAGAACAACTGGGATAATTTTAAGCATCTAATTGCCAATGAAGAATTTTTCTTTGATGCGTCTGTTAAAAAGGTGGCCTCCAGTGAATCTTATGAGAAAGTCACATTGATGGTCAGTGTGGAGGACACTGGAATTGGAATTCCTTTCTCAGCTCAAGATAGGATTTTAATGCCTTTTGTGCAAGCAGACAGCTCAACCTCTCGACATTATGGCGGTACTGGCATTGGCTTGAGTATTAGTAAGTGCCTGGTTGAACTAATGGGTGGTAAGATAAGTTTCATAAGCAGACCCCAGGTTGGGAGCACGTTTTCGTTTACTACAGATTTTGGAACGGTAAAGAAAAATTCAATAACTGACGTGAAGAAACTTAATTTGGAAGATCTGCCATCCGGTTTTAGAGGGCTTAAAGCCATAGTGGTTGATGGAAAACCTGTTAGGGCTGCTGTGACTAGATACCATTTGAAGAGACTAGGAATACAGGTTAAATTTGCAAATAGCATCAATAAGGCTGTTTCATTATGTGGGAAGGCCTCAGGATCATTTCAGCCTGATATTATTTTTGTTGAGAAGGATTCATGGGTTTGTGGAGAGGATGGGATCTTCAATGTGTGGCAACTTGACTGGAAACAGAATGGGCATGCGTTTAAGATGCCTCAAATAATCCTTCTTGCAAATGCTGAATTTGATAAACCTAAAGGTGCAGGTTTCAGTGACACCGTGATCATGAAGCCTCTTAGAGCTAGTATGATGGCTGCCTGTCTTCAGCAAGTTCTGGGAATGGGGAAGAAGAGGCAGCCAGGGAAAGACATCACTTTTGTACGAAGCCTTCTTTGTGGAAAGAAAATCTTAGTGGTTGATGACAATGCGGTAAACCGGAGGGTAGCTGCAGGTGCATTAAAAAAATTTGGAGCCGATGTAAAGTGTGCAGAAAGTGGCAAAGTTGCTCTTGAAATGCTTCAATTGCCTCACAATTTTGATGCTTGCTTCATGGACATTCAGATGCCAGAAATGGACGGGTTTGAAGCAACTCGGCAAATTCGGGTGATGGAGAGGAAGGCAAATGAGCATATGAATGGTGAAGGAAATTGCAGAAAAAGTGAGTTGCATATACCAATATTGGCCATGACAGCTGATGTAATCCAAGCTACATATGATGAGTGCTTAAAACGTGGAATGGATGGATATGTCTCAAAGCCTTTTGAGGAAGAGAATCTGTATCAAGCAGTTGCAGAGTTTTTCAAGCCCAAGGCTTCACCAGATTCTTTGCAGAATGGAAGAACTGCATAA 2994 0.4188 MGLGLKMQSHSHHPVALRLHEQAGSKRKYTFIQAHRAWLPKFLMMWILLMALIGCCIYSKMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYFRSPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERETFEKLHGWGIKTMGREPSQVRDEYAPVIFAQETVSYLESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPSMEERIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDVTNSTDPLIMYGNQNEEGDMSLVHESKLNFGDPYRKHQMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHKMEELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLSTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGLELAVFVSDKVPDIVKGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHVAENRMSTMNGKIETFVNGGSDEVVHMSGGYNFKTLSGYEAADEQNNWDNFKHLIANEEFFFDASVKKVASSESYEKVTLMVSVEDTGIGIPFSAQDRILMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGKISFISRPQVGSTFSFTTDFGTVKKNSITDVKKLNLEDLPSGFRGLKAIVVDGKPVRAAVTRYHLKRLGIQVKFANSINKAVSLCGKASGSFQPDIIFVEKDSWVCGEDGIFNVWQLDWKQNGHAFKMPQIILLANAEFDKPKGAGFSDTVIMKPLRASMMAACLQQVLGMGKKRQPGKDITFVRSLLCGKKILVVDDNAVNRRVAAGALKKFGADVKCAESGKVALEMLQLPHNFDACFMDIQMPEMDGFEATRQIRVMERKANEHMNGEGNCRKSELHIPILAMTADVIQATYDECLKRGMDGYVSKPFEEENLYQAVAEFFKPKASPDSLQNGRTA* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1527 997 Gene3D - 61 113 - -
Apr2g1527 997 ProSiteProfiles Histidine kinase domain profile. 390 680 IPR005467 -
Apr2g1527 997 CDD HisKA 383 444 IPR003661 GO:0000155|GO:0007165
Apr2g1527 997 ProSiteProfiles Response regulatory domain profile. 705 827 IPR001789 GO:0000160
Apr2g1527 997 SMART HisKA_10 383 448 IPR003661 GO:0000155|GO:0007165
Apr2g1527 997 Coils Coil 433 453 - -
Apr2g1527 997 CDD HATPase_EvgS-ArcB-TorS-like 500 675 - -
Apr2g1527 997 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 449 IPR036097 GO:0000155|GO:0007165
Apr2g1527 997 Pfam CHASE domain 113 293 IPR006189 -
Apr2g1527 997 Gene3D - 357 446 - -
Apr2g1527 997 ProSiteProfiles Response regulatory domain profile. 850 982 IPR001789 GO:0000160
Apr2g1527 997 Gene3D - 699 831 - -
Apr2g1527 997 Gene3D - 844 988 - -
Apr2g1527 997 Pfam Response regulator receiver domain 851 978 IPR001789 GO:0000160
Apr2g1527 997 PRINTS Bacterial sensor protein C-terminal signature 605 619 IPR004358 GO:0016310|GO:0016772
Apr2g1527 997 PRINTS Bacterial sensor protein C-terminal signature 623 633 IPR004358 GO:0016310|GO:0016772
Apr2g1527 997 PRINTS Bacterial sensor protein C-terminal signature 640 658 IPR004358 GO:0016310|GO:0016772
Apr2g1527 997 PRINTS Bacterial sensor protein C-terminal signature 664 677 IPR004358 GO:0016310|GO:0016772
Apr2g1527 997 SMART CHASE_2 110 295 IPR006189 -
Apr2g1527 997 Gene3D CHASE domain 114 329 IPR042240 -
Apr2g1527 997 Gene3D - 447 683 IPR036890 -
Apr2g1527 997 SMART HKATPase_4 495 680 IPR003594 -
Apr2g1527 997 PANTHER HISTIDINE KINASE 4 24 985 - -
Apr2g1527 997 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 437 675 IPR036890 -
Apr2g1527 997 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 495 678 IPR003594 -
Apr2g1527 997 CDD REC_hyHK_CKI1_RcsC-like 851 978 - -
Apr2g1527 997 Pfam His Kinase A (phospho-acceptor) domain 383 448 IPR003661 GO:0000155|GO:0007165
Apr2g1527 997 SUPERFAMILY CheY-like 701 828 IPR011006 -
Apr2g1527 997 SUPERFAMILY CheY-like 848 982 IPR011006 -
Apr2g1527 997 SMART REC_2 849 978 IPR001789 GO:0000160
Apr2g1527 997 ProSiteProfiles CHASE domain profile. 110 322 IPR006189 -
Apr2g1527 997 PANTHER TWO-COMPONENT HISTIDINE KINASE 24 985 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1527 Apr-Chr2 21170289 21179017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1527 13 990 Histidine Kinase Gene Family AT2G01830 69.422 0.0 1372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr2g1527 HATPase_c 1.1e-29 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1527 2 21170289 21179017 Apr2g1527 2 21170289 21179017 ECH