Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1512 ATGGTGAAATCCAACGATAATGGTTCTGGTTCTGGTTCGGTTGCTCCTTTCTTGAAGAAATGTTACGATATGGTGGAGGACCAGAAAACCGAGTCCATAATCTCTTGGAGTGAAGGCGGTGATAGTTTCGTGATTTTGGACATAACTGAATTCTCCGTCACACTCCTTCCCACATATTTCAAGCACAACAATTTTTCCAGCTTCATCAGACAACTCAACATCTATGGTTTCAGGAAAATTGATACGGATCGCTGGGAATTTGCCAATGAAAACTTTGTTAGGGGTCAAAAGGATTTGTTGAAGAATATACGTAGAAGGAAACATCCACACACGGTGGATCAGCAAAAAGCATTGCCGCAGCAGGACAATTGTGAGGAACCATCACATGAATCACCACATCATGGCCTTTGGAAAGAAGTTGAGAATCTCAAATCTGATAAAAATTCCCTCATGCAGGAGTTGGTCAAACTTAGGCAGCACCAGGAGTCTTCTGATAATAAGTTGCTACTCCTGAGTGATCGCCTTCAAGGAATGGAAAAGCATCAGCAGCAGATGTTATCATTCTTAGTCATGGTTGTGCAAAGCCCTGGGTTCATGGTTCAGCTGCTTCAGCCCAAGGAAAATAATTGGCGTTTGGCTGAACCGGGGAATATATTGGATCAAGATAAACAAGATGATCGTCCAGTTACTTCTGATGGGATGATAATAAAGTATAAACCACCTGTAGGTGAAAAGCTAAAGCCAGTGGTTCCACTATCTCCTGGTTTCGACAAGCAACCAGAACCTGAGATTTCTGTAGATGGGCTAAAAGACTTGTGCATCAGTTCTGAATTCTTGAAAGTACTTCAGGATGAAAAATTGTGTCCTTTGGAAAATCATTCTCCATTTCTCCTACCAGATTTACCTGATGATGGTTCGTGGGAACAGCTCTTTTTAGGTAGTCCTTTTTTGGCAAACATTCAAGATTCTAATAATGACAGTGAGGGCTGCCCTGTTAGTGGAACTGAGATGGAACCCATAATATCTGAGACTCCTGATGAAAGTTGTCGAACTTTTGAATCAATGATTGTAGAAATGGAGAAAATAGGGAAGGAGTAA 1098 0.4144 MVKSNDNGSGSGSVAPFLKKCYDMVEDQKTESIISWSEGGDSFVILDITEFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDRWEFANENFVRGQKDLLKNIRRRKHPHTVDQQKALPQQDNCEEPSHESPHHGLWKEVENLKSDKNSLMQELVKLRQHQESSDNKLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLQPKENNWRLAEPGNILDQDKQDDRPVTSDGMIIKYKPPVGEKLKPVVPLSPGFDKQPEPEISVDGLKDLCISSEFLKVLQDEKLCPLENHSPFLLPDLPDDGSWEQLFLGSPFLANIQDSNNDSEGCPVSGTEMEPIISETPDESCRTFESMIVEMEKIGKE* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1512 365 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr2g1512 365 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr2g1512 365 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr2g1512 365 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr2g1512 365 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr2g1512 365 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 348 IPR027725 -
Apr2g1512 365 Coils Coil 140 160 - -
Apr2g1512 365 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr2g1512 365 Gene3D - 10 107 IPR036388 -
Apr2g1512 365 MobiDBLite consensus disorder prediction 107 133 - -
Apr2g1512 365 SUPERFAMILY "Winged helix" DNA-binding domain 13 106 IPR036390 -
Apr2g1512 365 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 1 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1512 Apr-Chr2 21058931 21061309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1512 1 315 HSF AT1G67970 51.875 2.76e-99 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr2g1512 HSF_DNA-bind 3.2e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1512 2 21058931 21061309 Apr2g1512 2 21058931 21061309 ECH