Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1492 ATGGCTACATCCAAGGCTTTAACGTGTTCGTTGACACAGTTGCATCCGCTAACATGCGCCGCATCGGCATCGGCATCGGCATCGGCGTCGGCGTCACGGTTGGTGCCCCATCCACCCGACCTAATAAAATGGGTAACGAGAGAAGGTGGCTTCGTGCACCGCGCGGTGAAGATATCACAGGTCGACTCCTCCAATGGACTGGGACTAGTGGCCAAGGAACAAATTCCAAGTGGCACCGACCTCATTGTTCTACCACACCACCTTCCCTTACGCTTTACCTCTGCTCAACCCGACCCACGCGACTCTCTGCCCGTTCAATTGATGCGCCAAGTTCCTGAGGAACTATGGGCAATGAAATTGGGTTTGAAGCTTCTGCAGGAGAGAGCAAAAGTTGGATCGTTTTGGTGGCCATATATCAGTAATCTCCCGGAAACATTCACTGTGCCTATTTTCTTTTCTGGGGAAGACATCAAGAACTTGCACTATGCTCCTCTTCTTCACCAGGTAAACAAAAGGTGTCGGTTTCTTCTTGATTTTGAGCAAGAAGTCAAGCGTGCCTTAGTAGGTCTTACACCTGATAAGCATCCTTTTGGTGGTCAAGAAGTAGATGCATCGTCTCTTGGATGGGCAATGTCAGCAGTCTCGTCTAGAGCATTTCGGTTATATGGTGACAAGCATCCCAATGGGACGCATATTGACATACCCATGTTGCTCCCTCTAATTGATATGTGCAATCATAGTTTCAGTCCAAATGCTAGAATTGTTCAGGAACAAGATACCGGTAGCATGAAGCAAGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCTTTATTACTTTGCTATGGCTGTTTAAGCAATGATCTTTTCCTTCTTGATTATGGATTTGTGATCAAATCAAACCCTTATGACTGTATTGAACTCAAATATGACGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTTCTTCACCAAACTTCTCGGCACCTAACTCGTGGCAGGAACTGATTTTATCTCAGCTGAATCTAGCTGGAGATACTCCAGATCTCAAGGTGAGCTTAGGTGGTCAAGAAACGGTAGAGGGCCGCTTGTTGGCTGCACTGAGGGTACTCCTTTCGAGTAATATGGAAACTGTGCAGAAGTATGACCTCAGCACGCTCAAGTCTTTGGATGCTGAGGCTCCTCTTGGTGTTGCAAATGACATAGCTGTGTTTCGTACCCTAATTGCTTTGTGTGTCATTGCACTGGGACATTTTCCCACCAAAATAACGGATGATGAATCACTGTTGAAGCAGGGTGCTTCTGGTTCAACCGAGTTAGCCATTCAGTACAGAATCCAAAAGAAATATGTGATTATAGATGTGATGGGAAATCTCTCAAAAAGGGTAAAGCTTCTATCATCAAAGGAAACAGCAACTGCCGAAGGTTAA 1437 0.4614 MATSKALTCSLTQLHPLTCAASASASASASASRLVPHPPDLIKWVTREGGFVHRAVKISQVDSSNGLGLVAKEQIPSGTDLIVLPHHLPLRFTSAQPDPRDSLPVQLMRQVPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETFTVPIFFSGEDIKNLHYAPLLHQVNKRCRFLLDFEQEVKRALVGLTPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGDKHPNGTHIDIPMLLPLIDMCNHSFSPNARIVQEQDTGSMKQVVAETAIKEDDPLLLCYGCLSNDLFLLDYGFVIKSNPYDCIELKYDGALLDAASMAAGVSSPNFSAPNSWQELILSQLNLAGDTPDLKVSLGGQETVEGRLLAALRVLLSSNMETVQKYDLSTLKSLDAEAPLGVANDIAVFRTLIALCVIALGHFPTKITDDESLLKQGASGSTELAIQYRIQKKYVIIDVMGNLSKRVKLLSSKETATAEG* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1492 478 ProSiteProfiles SET domain profile. 56 283 IPR001214 GO:0005515
Apr2g1492 478 CDD SET_LSMT 55 297 - -
Apr2g1492 478 Pfam SET domain 66 283 IPR001214 GO:0005515
Apr2g1492 478 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 475 - -
Apr2g1492 478 PANTHER F21J9.27 5 475 - -
Apr2g1492 478 Pfam Rubisco LSMT substrate-binding 336 453 IPR015353 -
Apr2g1492 478 Gene3D set domain protein methyltransferase, domain 1 7 296 - -
Apr2g1492 478 SUPERFAMILY SET domain 36 301 IPR046341 -
Apr2g1492 478 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 293 472 IPR036464 -
Apr2g1492 478 Gene3D - 335 475 IPR036464 -
Apr2g1492 478 SMART set_7 54 289 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr2g1492 SET 8e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1492 2 20932253 20935145 Apr2g1492 2 20932253 20935145 ECH