Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0450 ATGTCTCATTCTTCGGGAAAACCCGTTTCCGAGGTGGTGGGTATAGACGCCTTCGCCGATCGCTTCCGTGAGACGGTGAACTTCGACACCAACAAACCCGATTTCCGAGAACTCGATCTGGGTTCACCTGTTTCGCCATTGCGAACCCGAGGACCCGCAGCAAGTAGCAGTTCAAGCTCTTCCGGATCCTTCTCTGGTAGAAACGGGCATAACCCGGTTACCCGAAGATCCGAATCCACACCTGCCGGAAGCAATGGTAACACTAACAATAACAGCAACTCCGGCGAGCTTTCCGGTTCCAGTGAGAACAGTCCCACGGCGGGGAATGCGCGTGGTTTCAAACCGGGTCATGTTAGATCCGATTCGGGATCCGCGCCGGCGCCGTTAATTTATTCGTGTCAGACGGTGAATTCGCCGGCGCTGAATGTTCTCCCCACCGGAAACATATGCCCTTCCGGCAAGATCCTGAAGACGGGGATGGCGGCGGGTCGGAGCTCCAGAACGGATGTTCTCGGATCCGGGATGGGGAATTACGGCCACGGGAGCATAATGCGCGGTGGCGCAAAGGCGGAGACGGTGGGTTCGGGTTCGGGTTCGGGTTCGAGGTGCGGTGTTGGCAATGAGACGGTGAAGAGAGGGGTGCAGAGTGTGGATCCGGAAGAGCTGAAGAGAGCTGGGAATGAACATTACAAAAGGGGTCACTTTGCTGATGCTTTGAGTCTCTACGATCGCGCAATTGCGATGTCGCCGGCGAGTGCCGCGTACCGGAGTAACCGAGCCGCGGCGTTGACTGGGTTGGGAAGGTTGGCTGAGGCTGTGAGGGAATGTGAGGAGGCTGTGAGGTTGGATCCTAATTATGGAAGAGCTCATCAGCGATTGGCTTCTCTTTTTCTTAGGTTGGGACAAGTGGAAAATGCTAGGAAGCATCTTTGTTATCCCGGGCTGCAGTTAGATCCGTGTGAGATGCAGAAGTTGCAAGTGGTGGAAAAGCATATAAGCAAATGTGGGGATGTTAGGAGAATAGGGGATTGGAAGAGTGTTCTGAGGGAAGTTGATGCTGCTGTTGCTGCCGGAGCGGATTCTTCTCCTCGGCTCTTTATGTGTAGAGCAGAAGCCCTTTTGAAGCTGCACCAAATAGATGATGCAGAATCGGTTATGTTTCATATTCCCAAAATGGAACTACTTAGTAATTCCTCTTCTCAAGCTAGATTTTTTGGGATGCTTGCTGAAGCTTATTCCTATTTTGTCAGAGCTCAGATTGAGATGGCATTGGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCCAGTCAGATTGATCCCCGGAATGTTGAAGTTGCTGTTTTGCTCAACAATGTAAGGATGGTGGCAAGAGCTCGAGTGCGTGGTAATGATCTATTTAAATCTGAAAGGTTCACTGAAGCTTGCTCTGCTTATGGGGAAGGTTTGAGATTGGACCCTTCAAATGCTGTTCTATATTGTAATAGAGCAGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGGTCAATTGAAGACTCCAACCAAGCCTTACATATCCAACCAAATTACACCAAAGCCCTTCTTCGGAGGGCTGCATCAAACAGCAAGCTAGAAAGGTGGGAAGAAGCAGTCAAAGATTATGAAGTCTTGCGGAGAGAACTTCCTAATGACAATGAAGTTGCTGAAGCTCTTTTTCATGCACAAGTTTCCCTAAAGAAATCACGTGGGGAAGAAGTATATAATTTAAAATTTGGTGGTGAAGTGGAAGTAGTATCAGGTCTTGAGCAGTTTAGAGCCGCGATATCTTTACCAGGTGTATCTATTGTCCATTTTGAAGTTGCATCTAACTTGCAATGCAAGCAAATATCGCCATTTGTAGATACACTATGTGGTCGATATCCATCTATTAACTTCCTCAAGGTGGACATTCAAGAAAGCCCAACAGTTGCAACTGCAGAGAATGTTAGGATTGTACCAACCTTCAAGATATACAAAAATGGCAGCCGAGTGAAGGAAATTGTGTGCCCTAGTCGCGACATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2076 0.4865 MSHSSGKPVSEVVGIDAFADRFRETVNFDTNKPDFRELDLGSPVSPLRTRGPAASSSSSSSGSFSGRNGHNPVTRRSESTPAGSNGNTNNNSNSGELSGSSENSPTAGNARGFKPGHVRSDSGSAPAPLIYSCQTVNSPALNVLPTGNICPSGKILKTGMAAGRSSRTDVLGSGMGNYGHGSIMRGGAKAETVGSGSGSGSRCGVGNETVKRGVQSVDPEELKRAGNEHYKRGHFADALSLYDRAIAMSPASAAYRSNRAAALTGLGRLAEAVRECEEAVRLDPNYGRAHQRLASLFLRLGQVENARKHLCYPGLQLDPCEMQKLQVVEKHISKCGDVRRIGDWKSVLREVDAAVAAGADSSPRLFMCRAEALLKLHQIDDAESVMFHIPKMELLSNSSSQARFFGMLAEAYSYFVRAQIEMALGRFENAVTAAEKASQIDPRNVEVAVLLNNVRMVARARVRGNDLFKSERFTEACSAYGEGLRLDPSNAVLYCNRAACWFKLGQWERSIEDSNQALHIQPNYTKALLRRAASNSKLERWEEAVKDYEVLRRELPNDNEVAEALFHAQVSLKKSRGEEVYNLKFGGEVEVVSGLEQFRAAISLPGVSIVHFEVASNLQCKQISPFVDTLCGRYPSINFLKVDIQESPTVATAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYSF* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0450 691 SUPERFAMILY TPR-like 219 446 IPR011990 GO:0005515
Apr2g0450 691 Pfam Tetratricopeptide repeat 412 444 IPR019734 GO:0005515
Apr2g0450 691 CDD TRX_family 596 683 - -
Apr2g0450 691 ProSiteProfiles TPR repeat profile. 411 444 IPR019734 GO:0005515
Apr2g0450 691 SMART tpr_5 525 558 IPR019734 GO:0005515
Apr2g0450 691 SMART tpr_5 253 286 IPR019734 GO:0005515
Apr2g0450 691 SMART tpr_5 491 524 IPR019734 GO:0005515
Apr2g0450 691 SMART tpr_5 457 490 IPR019734 GO:0005515
Apr2g0450 691 SMART tpr_5 219 252 IPR019734 GO:0005515
Apr2g0450 691 SMART tpr_5 411 444 IPR019734 GO:0005515
Apr2g0450 691 MobiDBLite consensus disorder prediction 49 108 - -
Apr2g0450 691 MobiDBLite consensus disorder prediction 27 124 - -
Apr2g0450 691 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 22 689 - -
Apr2g0450 691 Gene3D Tetratricopeptide repeat domain 217 577 IPR011990 GO:0005515
Apr2g0450 691 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
Apr2g0450 691 Pfam Thioredoxin 598 682 IPR013766 -
Apr2g0450 691 Gene3D Glutaredoxin 584 690 - -
Apr2g0450 691 SUPERFAMILY Thioredoxin-like 494 689 IPR036249 -
Apr2g0450 691 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 22 689 IPR044534 -
Apr2g0450 691 Pfam Tetratricopeptide repeat 225 285 - -
Apr2g0450 691 MobiDBLite consensus disorder prediction 189 225 - -
Apr2g0450 691 ProSiteProfiles TPR repeat profile. 491 524 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0450 Apr-Chr2 5225954 5229863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0450 456 601 U-box Gene Family AT3G07370 28.415 6.03e-09 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0450 2 5225954 5229863 Apr2g0450 2 5225954 5229863 ECH
Apr2g0450 2 5225954 5229863 Apr5g0159 5 1390410 1394172 PCT