Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0417 ATGGCTCCGAGGGACAGAGCCACCGCACTCACCGGACCCAATCCACCTCCCCATAACGCCAAAGAGATCCGTTACAGAGGCGTAAGAAAGCGTCCATGGGGGCGTTACGCCGCCGAGATCCGCGACCCAGGCAAGAAAACCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAAGAAGCCGCTCGTGCTTATGACGCCGCGGCGCGTGAGTTTCGCGGCGCAAAGGCCAAGACTAATTTTCCCACACCCTCTGAACTCATAAACAACAACGCGCGAAGCCCAAGCCAGAGCAGCACGCTCGACTCCTCCTCTCCGCCGCCGCCGCCGCTCGACCTCACCCTCACTCCGCTCTCCGCCGCTGGCGTCGGCGCCTTGGCGTTCCCGGTGGCGCGTCCTGTGTTTTTCTTTGATGCGTTTGCGCGTGCGGATTCCGTAACCGGCGTGGCACGCCGTGAGATGTGTGGGCTCGAACGCCCGGTGGCTGATTTCCGTCGAGCCGCCGCCTCCGCCGCAGCGCAGAGCGATTCTGATTCTTCCTCCGTCGTGGACTACGACTGCGTTCCGCGTCGAGGACTTTTAGATCTTGACCTGAACGTTCCTCCTCCGCCGGAGGTTGCTTGA 621 0.6312 MAPRDRATALTGPNPPPHNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTPSELINNNARSPSQSSTLDSSSPPPPPLDLTLTPLSAAGVGALAFPVARPVFFFDAFARADSVTGVARREMCGLERPVADFRRAAASAAAQSDSDSSSVVDYDCVPRRGLLDLDLNVPPPPEVA* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0417 206 PANTHER ERF FAMILY PROTEIN 1 190 - -
Apr2g0417 206 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Apr2g0417 206 MobiDBLite consensus disorder prediction 75 111 - -
Apr2g0417 206 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Apr2g0417 206 MobiDBLite consensus disorder prediction 1 26 - -
Apr2g0417 206 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 190 - -
Apr2g0417 206 MobiDBLite consensus disorder prediction 81 100 - -
Apr2g0417 206 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Apr2g0417 206 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Apr2g0417 206 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Apr2g0417 206 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Apr2g0417 206 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Apr2g0417 206 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0417 Apr-Chr2 4924034 4925333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0417 14 137 AP2-EREBP Transcription Factor Family AT3G15210 64.539 4.48e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr2g0417 AP2 1.9e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0417 2 4924034 4925333 Apr5g0132 5 1177810 1179075 ECH
Apr3g1031 3 25052676 25053696 Apr2g0417 2 4924034 4925333 ECH
Apr2g0417 2 4924034 4925333 Apr1g1445 1 23805118 23807552 ECH
Apr2g0417 2 4924034 4925333 Apr3g1031 3 25052676 25053696 ECH
Apr2g0417 2 4924034 4925333 Apr2g0417 2 4924034 4925333 ECH