Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1445 ATGGCTCCCAGGGATAAGACGGCTGCCGTTAAGACTAACGGCAACGGTAACGCCGGGGTGAAGGAGGTGCATTTTCGGGGAGTGAGGAAGAGGCCGTGGGGAAGATACGCCGCCGAGATCAGAGATCCCGCCAAGAAGAGCCGCGTCTGGCTCGGCACCTTCGACACGGCGGAGGAGGCGGCCAGAGCCTACGACGCCGCCGCCCGGGAGTTTCGCGGCCCCAAGGCCAAAACCAACTTCCCTCTCCCTTCCGACAATGTCAAAAACCAGAGCCCTAGCCAGAGCAGCACCGTCGAGTCCTCCAGTCGTGACCGCGACCACGCCGCCGATTCCTCGCCGCTCGACCTCAACCTCGCCCCCGCTCGATTCCCCTTCCAGCACCAGTTCCCCCCAATCGGTGCGGTTTTTCCCGGCACGATGCCGTCGCCGAACCAGGTTTTGTATTTCGACGCGATGTTACGCGCCGGCATGGTTGGTCCACGTCCGTCGCAGCGCTTCGCGTTCGATTATAAGCATCCCGTGGCGGCGAGTGAGTTGCACGCGACGGCGAGCGACTCGGACTCGTCCTCCGTGATCGATCTGAACCACAATGAAGGCGATGTTAAGGTGGCCGGTACTAGAGTCTTCGATCTCGATCTTAACCACCCTCCTCCGCATGAGATCGCGTGA 669 0.6188 MAPRDKTAAVKTNGNGNAGVKEVHFRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPLPSDNVKNQSPSQSSTVESSSRDRDHAADSSPLDLNLAPARFPFQHQFPPIGAVFPGTMPSPNQVLYFDAMLRAGMVGPRPSQRFAFDYKHPVAASELHATASDSDSSSVIDLNHNEGDVKVAGTRVFDLDLNHPPPHEIA* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1445 222 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Apr1g1445 222 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Apr1g1445 222 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Apr1g1445 222 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Apr1g1445 222 MobiDBLite consensus disorder prediction 82 99 - -
Apr1g1445 222 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Apr1g1445 222 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Apr1g1445 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 86 - -
Apr1g1445 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 86 201 - -
Apr1g1445 222 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Apr1g1445 222 MobiDBLite consensus disorder prediction 73 115 - -
Apr1g1445 222 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 86 - -
Apr1g1445 222 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 86 201 - -
Apr1g1445 222 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1445 Apr-Chr1 23805118 23807552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1445 1 218 AP2-EREBP Transcription Factor Family AT5G44210 42.857 2.50e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr1g1445 AP2 7e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1445 1 23805118 23807552 Apr1g1445 1 23805118 23807552 ECH
Apr1g1445 1 23805118 23807552 Apr3g1031 3 25052676 25053696 ECH
Apr2g0417 2 4924034 4925333 Apr1g1445 1 23805118 23807552 ECH
Apr5g0132 5 1177810 1179075 Apr1g1445 1 23805118 23807552 ECH
Apr3g1031 3 25052676 25053696 Apr1g1445 1 23805118 23807552 ECH